RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 FOXA3P55318 350 aaPredicted RBP11.67□□□□□ -0.54
HMGN1-219ENST00000491183 REG3AQ06141 175 aa11.67□□□□□ -0.54
HMGN1-219ENST00000491183 CIRBP-AS1Q8TBR5 109 aa11.67□□□□□ -0.54
HMGN1-219ENST00000491183 GFRA4Q9GZZ7 299 aa11.67□□□□□ -0.54
HMGN1-219ENST00000491183 MYCBP2O75592 4640 aa11.66□□□□□ -0.54
HMGN1-219ENST00000491183 TRAV26-2A0A0B4J265 109 aa11.66□□□□□ -0.54
HMGN1-219ENST00000491183 PLA2G1BP04054 148 aaKnown RBP11.66□□□□□ -0.54
HMGN1-219ENST00000491183 IGLV10-54A0A075B6I4 117 aa11.65□□□□□ -0.54
HMGN1-219ENST00000491183 GATCO43716 136 aaKnown RBP11.65□□□□□ -0.54
HMGN1-219ENST00000491183 FAM231DQ6ZW35 169 aa11.65□□□□□ -0.54
HMGN1-219ENST00000491183 CEBPGP53567 150 aa11.64□□□□□ -0.55
HMGN1-219ENST00000491183 COTL1Q14019 142 aa11.64□□□□□ -0.55
HMGN1-219ENST00000491183 DGAT2L7PQ6IED9 249 aa11.64□□□□□ -0.55
HMGN1-219ENST00000491183 AMTP48728 403 aa11.63□□□□□ -0.55
HMGN1-219ENST00000491183 C9orf163Q8N9P6 203 aa11.63□□□□□ -0.55
HMGN1-219ENST00000491183 RPL39LQ96EH5 51 aaKnown RBP11.63□□□□□ -0.55
HMGN1-219ENST00000491183 DMBT1Q9UGM3 2413 aaPredicted RBP11.62□□□□□ -0.55
HMGN1-219ENST00000491183 TRAV8-4A0A0B4J246 113 aa11.62□□□□□ -0.55
HMGN1-219ENST00000491183 A8MWL6 223 aa11.62□□□□□ -0.55
HMGN1-219ENST00000491183 KRTAP10-4P60372 401 aaPredicted RBP11.62□□□□□ -0.55
HMGN1-219ENST00000491183 EIF5A2Q9GZV4 153 aaKnown RBP11.61□□□□□ -0.55
HMGN1-219ENST00000491183 A0A1B0GVG6 124 aa11.6□□□□□ -0.55
HMGN1-219ENST00000491183 UBE2L6O14933 153 aa11.6□□□□□ -0.55
HMGN1-219ENST00000491183 CT83Q5H943 113 aa11.6□□□□□ -0.55
HMGN1-219ENST00000491183 SMIM15Q7Z3B0 74 aa11.6□□□□□ -0.55
HMGN1-219ENST00000491183 FAM210AQ96ND0 272 aa11.6□□□□□ -0.55
HMGN1-219ENST00000491183 SMIM7Q9BQ49 75 aa11.6□□□□□ -0.55
HMGN1-219ENST00000491183 NDUFS6O75380 124 aaKnown RBP11.59□□□□□ -0.55
HMGN1-219ENST00000491183 SRP19P09132 144 aaKnown RBP11.59□□□□□ -0.55
HMGN1-219ENST00000491183 LINC01551Q86U37 167 aa11.59□□□□□ -0.55
HMGN1-219ENST00000491183 CLRN3Q8NCR9 226 aa11.59□□□□□ -0.55
HMGN1-219ENST00000491183 GAS8-AS1O95177 125 aa11.58□□□□□ -0.56
HMGN1-219ENST00000491183 SDIM1Q6ZPB5 146 aa11.58□□□□□ -0.56
HMGN1-219ENST00000491183 SDHAF1A6NFY7 115 aa11.57□□□□□ -0.56
HMGN1-219ENST00000491183 ZNF727A8MUV8 499 aa11.57□□□□□ -0.56
HMGN1-219ENST00000491183 PANO1I0J062 215 aa11.57□□□□□ -0.56
HMGN1-219ENST00000491183 NCR2O95944 276 aa11.57□□□□□ -0.56
HMGN1-219ENST00000491183 SLPIP03973 132 aa11.57□□□□□ -0.56
HMGN1-219ENST00000491183 TEX261Q6UWH6 196 aa11.57□□□□□ -0.56
HMGN1-219ENST00000491183 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.57□□□□□ -0.56
HMGN1-219ENST00000491183 TSKUQ8WUA8 353 aa11.56□□□□□ -0.56
HMGN1-219ENST00000491183 OSTCQ9NRP0 149 aa11.56□□□□□ -0.56
HMGN1-219ENST00000491183 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.55□□□□□ -0.56
HMGN1-219ENST00000491183 TRBV6-5A0A0K0K1A5 114 aa11.55□□□□□ -0.56
HMGN1-219ENST00000491183 hDV102S1A0JD36 115 aa11.55□□□□□ -0.56
HMGN1-219ENST00000491183 IGKV2-29A2NJV5 120 aaPredicted RBP11.55□□□□□ -0.56
HMGN1-219ENST00000491183 FAM231BA6NCW3 169 aa11.55□□□□□ -0.56
HMGN1-219ENST00000491183 HIGD1CA8MV81 97 aa11.55□□□□□ -0.56
HMGN1-219ENST00000491183 CNBPP62633 177 aaKnown RBP11.55□□□□□ -0.56
HMGN1-219ENST00000491183 IGKV3OR2-268A0A0C4DH90 116 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 A0A1B0GUT8 65 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 GAGE12HA6NDE8 117 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 H7C423 109 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 APCSP02743 223 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 BORCS7Q96B45 105 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 RNF185Q96GF1 192 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 TMEM191AQ9H0A3 160 aa11.54□□□□□ -0.56
HMGN1-219ENST00000491183 KRTAP29-1A8MX34 341 aaPredicted RBP11.53□□□□□ -0.56
HMGN1-219ENST00000491183 I3L3M4 83 aa11.53□□□□□ -0.56
HMGN1-219ENST00000491183 J3QL48 77 aa11.53□□□□□ -0.56
HMGN1-219ENST00000491183 FGF6P10767 208 aa11.53□□□□□ -0.56
HMGN1-219ENST00000491183 PMCHP20382 165 aa11.53□□□□□ -0.56
HMGN1-219ENST00000491183 AMMECR1LQ6DCA0 310 aa11.53□□□□□ -0.56
HMGN1-219ENST00000491183 V9GYV3 84 aa11.53□□□□□ -0.56
HMGN1-219ENST00000491183 C9JQL5 133 aa11.52□□□□□ -0.57
HMGN1-219ENST00000491183 RAB4AP20338 218 aa11.52□□□□□ -0.57
HMGN1-219ENST00000491183 RNASEKQ6P5S7 137 aaKnown RBP11.52□□□□□ -0.57
HMGN1-219ENST00000491183 C15orf56Q8N910 161 aa11.52□□□□□ -0.57
HMGN1-219ENST00000491183 TSHBP01222 138 aa11.51□□□□□ -0.57
HMGN1-219ENST00000491183 ESDP10768 282 aa11.51□□□□□ -0.57
HMGN1-219ENST00000491183 RPS10P46783 165 aaKnown RBP11.51□□□□□ -0.57
HMGN1-219ENST00000491183 CHCHD10Q8WYQ3 142 aaPredicted RBP11.51□□□□□ -0.57
HMGN1-219ENST00000491183 ISOC2Q96AB3 205 aa11.51□□□□□ -0.57
HMGN1-219ENST00000491183 ST20Q9HBF5 79 aa11.51□□□□□ -0.57
HMGN1-219ENST00000491183 AP5S1Q9NUS5 200 aa11.51□□□□□ -0.57
HMGN1-219ENST00000491183 POLR2KP53803 58 aaKnown RBP11.5□□□□□ -0.57
HMGN1-219ENST00000491183 TMEM241Q24JQ0 296 aa11.5□□□□□ -0.57
HMGN1-219ENST00000491183 AMN1Q8IY45 258 aa11.5□□□□□ -0.57
HMGN1-219ENST00000491183 NUP35Q8NFH5 326 aa11.5□□□□□ -0.57
HMGN1-219ENST00000491183 IGHV3-64A0A075B6Q5 118 aa11.49□□□□□ -0.57
HMGN1-219ENST00000491183 RPL37AP61513 92 aaKnown RBP11.49□□□□□ -0.57
HMGN1-219ENST00000491183 RPL23P62829 140 aaKnown RBP11.49□□□□□ -0.57
HMGN1-219ENST00000491183 CIRBPQ14011 172 aaKnown RBP11.49□□□□□ -0.57
HMGN1-219ENST00000491183 TMEM242Q9NWH2 141 aa11.49□□□□□ -0.57
HMGN1-219ENST00000491183 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.48□□□□□ -0.57
HMGN1-219ENST00000491183 ZNF25P17030 456 aaPredicted RBP11.48□□□□□ -0.57
HMGN1-219ENST00000491183 SRSF3P84103 164 aaKnown RBP11.48□□□□□ -0.57
HMGN1-219ENST00000491183 RIGQ13278 110 aa11.48□□□□□ -0.57
HMGN1-219ENST00000491183 FAM74A3Q4VXF1 159 aa11.48□□□□□ -0.57
HMGN1-219ENST00000491183 OR5A1Q8NGJ0 315 aa11.48□□□□□ -0.57
HMGN1-219ENST00000491183 MRAP2Q96G30 205 aa11.48□□□□□ -0.57
HMGN1-219ENST00000491183 TRBV27A0A0K0K1C4 114 aa11.47□□□□□ -0.57
HMGN1-219ENST00000491183 SMKR1H3BMG3 65 aa11.47□□□□□ -0.57
HMGN1-219ENST00000491183 FOXI1Q12951 378 aa11.47□□□□□ -0.57
HMGN1-219ENST00000491183 HIGD2BQ4VC39 106 aa11.47□□□□□ -0.57
HMGN1-219ENST00000491183 CFAP161Q6P656 301 aa11.47□□□□□ -0.57
HMGN1-219ENST00000491183 CHTF8P0CG12 524 aa11.46□□□□□ -0.57
HMGN1-219ENST00000491183 HNRNPA3P51991 378 aaKnown RBP11.46□□□□□ -0.57
HMGN1-219ENST00000491183 BTF3L4Q96K17 158 aa11.46□□□□□ -0.57
HMGN1-219ENST00000491183 LRP1Q07954 4544 aaKnown RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms