RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 UBE2L6O14933 153 aa8.68□□□□□ -1.02
VARS-227ENST00000489979 AKAP14Q86UN6 197 aa8.68□□□□□ -1.02
VARS-227ENST00000489979 BAGE2Q86Y30 109 aa8.68□□□□□ -1.02
VARS-227ENST00000489979 MLST8Q9BVC4 326 aa8.68□□□□□ -1.02
VARS-227ENST00000489979 A0A096LNI7 61 aa8.67□□□□□ -1.02
VARS-227ENST00000489979 IGKV3OR2-268A0A0C4DH90 116 aa8.67□□□□□ -1.02
VARS-227ENST00000489979 PAGE4O60829 102 aa8.67□□□□□ -1.02
VARS-227ENST00000489979 S100A9P06702 114 aaKnown RBP8.67□□□□□ -1.02
VARS-227ENST00000489979 SRSF9Q13242 221 aaKnown RBP eCLIP8.67□□□□□ -1.02
VARS-227ENST00000489979 TCTE3Q8IZS6 198 aa8.67□□□□□ -1.02
VARS-227ENST00000489979 KCNRGQ8N5I3 272 aa8.67□□□□□ -1.02
VARS-227ENST00000489979 SCO2A0A1W2PP80 73 aa8.66□□□□□ -1.02
VARS-227ENST00000489979 G3V3Q6 166 aa8.66□□□□□ -1.02
VARS-227ENST00000489979 BCL2L11O43521 198 aa8.65□□□□□ -1.02
VARS-227ENST00000489979 RASL11AQ6T310 242 aa8.65□□□□□ -1.02
VARS-227ENST00000489979 PGLYRP4Q96LB8 373 aa8.65□□□□□ -1.02
VARS-227ENST00000489979 TPPP3Q9BW30 176 aa8.65□□□□□ -1.02
VARS-227ENST00000489979 GVQW2A0A096LPI5 108 aaPredicted RBP8.64□□□□□ -1.03
VARS-227ENST00000489979 AMTP48728 403 aa8.64□□□□□ -1.03
VARS-227ENST00000489979 EIF5AL1Q6IS14 154 aaKnown RBP8.64□□□□□ -1.03
VARS-227ENST00000489979 Q6ZRP5 223 aa8.64□□□□□ -1.03
VARS-227ENST00000489979 CHCHD10Q8WYQ3 142 aaPredicted RBP8.64□□□□□ -1.03
VARS-227ENST00000489979 COTL1Q14019 142 aa8.63□□□□□ -1.03
VARS-227ENST00000489979 TMUB2Q71RG4 321 aa8.63□□□□□ -1.03
VARS-227ENST00000489979 FER1L6-AS1Q8NA97 138 aa8.63□□□□□ -1.03
VARS-227ENST00000489979 NIT2Q9NQR4 276 aa8.63□□□□□ -1.03
VARS-227ENST00000489979 LINC00474Q9P2X8 69 aa8.63□□□□□ -1.03
VARS-227ENST00000489979 UMAD1C9J7I0 102 aa8.62□□□□□ -1.03
VARS-227ENST00000489979 IGLC6P0CF74 106 aa8.62□□□□□ -1.03
VARS-227ENST00000489979 A0A1B0GV50 99 aa8.61□□□□□ -1.03
VARS-227ENST00000489979 CACNG7P62955 275 aa8.61□□□□□ -1.03
VARS-227ENST00000489979 CYTL1Q9NRR1 136 aa8.61□□□□□ -1.03
VARS-227ENST00000489979 MUC2Q02817 5179 aa8.61□□□□□ -1.03
VARS-227ENST00000489979 FOXI1Q12951 378 aa8.6□□□□□ -1.03
VARS-227ENST00000489979 SFT2D1Q8WV19 159 aa8.6□□□□□ -1.03
VARS-227ENST00000489979 LINC00526Q96FQ7 95 aa8.6□□□□□ -1.03
VARS-227ENST00000489979 RPL35P42766 123 aaKnown RBP8.59□□□□□ -1.03
VARS-227ENST00000489979 AMMECR1LQ6DCA0 310 aa8.59□□□□□ -1.03
VARS-227ENST00000489979 OR2D3Q8NGH3 330 aa8.59□□□□□ -1.03
VARS-227ENST00000489979 PKIGQ9Y2B9 76 aa8.59□□□□□ -1.03
VARS-227ENST00000489979 FAM231BA6NCW3 169 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 TEX46H3BTG2 121 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 TRGC1P0CF51 173 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 RPS20P60866 119 aaKnown RBP8.58□□□□□ -1.04
VARS-227ENST00000489979 RNASEKQ6P5S7 137 aaKnown RBP8.58□□□□□ -1.04
VARS-227ENST00000489979 SLC51BQ86UW2 128 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 FAM213BQ8TBF2 198 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 MBD3L1Q8WWY6 194 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 CARD19Q96LW7 228 aa8.58□□□□□ -1.04
VARS-227ENST00000489979 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.57□□□□□ -1.04
VARS-227ENST00000489979 IGKV2-29A2NJV5 120 aaPredicted RBP8.57□□□□□ -1.04
VARS-227ENST00000489979 NTF3P20783 257 aa8.57□□□□□ -1.04
VARS-227ENST00000489979 XCL1P47992 114 aa8.57□□□□□ -1.04
VARS-227ENST00000489979 IGHV1-58A0A0C4DH39 117 aa8.56□□□□□ -1.04
VARS-227ENST00000489979 F2Z2F3 143 aa8.56□□□□□ -1.04
VARS-227ENST00000489979 LYZL1Q6UWQ5 148 aa8.56□□□□□ -1.04
VARS-227ENST00000489979 C19orf71A6NCJ1 209 aa8.55□□□□□ -1.04
VARS-227ENST00000489979 H2AFB1P0C5Y9 115 aa8.55□□□□□ -1.04
VARS-227ENST00000489979 FGF6P10767 208 aa8.55□□□□□ -1.04
VARS-227ENST00000489979 PTTG1IPP53801 180 aa8.55□□□□□ -1.04
VARS-227ENST00000489979 CENPWQ5EE01 88 aa8.55□□□□□ -1.04
VARS-227ENST00000489979 GATD1Q8NB37 220 aa8.55□□□□□ -1.04
VARS-227ENST00000489979 TRAV26-2A0A0B4J265 109 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 A0A1W2PNN7 141 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 XKRY2A2RUG3 117 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 H7C423 109 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 CCL25O15444 150 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 APCSP02743 223 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 SYCNQ0VAF6 134 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 GAGE2BQ13066 116 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 ZNF664Q8N3J9 261 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 OR5A1Q8NGJ0 315 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 KRTAP9-2Q9BYQ4 174 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 PSORS1C2Q9UIG4 136 aa8.54□□□□□ -1.04
VARS-227ENST00000489979 LINC00959A0A1B0GUT2 108 aa8.53□□□□□ -1.04
VARS-227ENST00000489979 ZNF561-AS1K7EIQ3 104 aa8.53□□□□□ -1.04
VARS-227ENST00000489979 NCR2O95944 276 aa8.53□□□□□ -1.04
VARS-227ENST00000489979 IFNA1P01562 189 aa8.53□□□□□ -1.04
VARS-227ENST00000489979 RPL39LQ96EH5 51 aaKnown RBP8.53□□□□□ -1.04
VARS-227ENST00000489979 MT-ND6P03923 174 aa8.52□□□□□ -1.05
VARS-227ENST00000489979 TWIST1Q15672 202 aa8.52□□□□□ -1.05
VARS-227ENST00000489979 C9orf62Q8N4C0 152 aa8.52□□□□□ -1.05
VARS-227ENST00000489979 PRR26Q8N8Z3 221 aa8.52□□□□□ -1.05
VARS-227ENST00000489979 C11orf52Q96A22 123 aa8.52□□□□□ -1.05
VARS-227ENST00000489979 LOC107984640A0A0U1RRK4 108 aa8.51□□□□□ -1.05
VARS-227ENST00000489979 RAB19A4D1S5 217 aa8.51□□□□□ -1.05
VARS-227ENST00000489979 ZNF25P17030 456 aaPredicted RBP8.51□□□□□ -1.05
VARS-227ENST00000489979 C1orf137Q5JT78 98 aa8.51□□□□□ -1.05
VARS-227ENST00000489979 BTF3L4Q96K17 158 aa8.51□□□□□ -1.05
VARS-227ENST00000489979 CTRLP40313 264 aa8.5□□□□□ -1.05
VARS-227ENST00000489979 CAMPP49913 170 aa8.5□□□□□ -1.05
VARS-227ENST00000489979 GNG4P50150 75 aa8.5□□□□□ -1.05
VARS-227ENST00000489979 TMEM101Q96IK0 257 aa8.5□□□□□ -1.05
VARS-227ENST00000489979 MANBALQ9NQG1 85 aa8.5□□□□□ -1.05
VARS-227ENST00000489979 GNG13Q9P2W3 67 aa8.5□□□□□ -1.05
VARS-227ENST00000489979 SDHAF1A6NFY7 115 aa8.49□□□□□ -1.05
VARS-227ENST00000489979 BCL2P10415 239 aa8.49□□□□□ -1.05
VARS-227ENST00000489979 CCL20P78556 96 aa8.49□□□□□ -1.05
VARS-227ENST00000489979 SS18Q15532 418 aa8.49□□□□□ -1.05
VARS-227ENST00000489979 C9orf116Q5BN46 136 aaPredicted RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms