RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 Q0VG73 95 aa9.55□□□□□ -0.88
C9orf3-221ENST00000489562 NTM-AS1Q6ZSK4 140 aa9.55□□□□□ -0.88
C9orf3-221ENST00000489562 FA2HQ7L5A8 372 aa9.55□□□□□ -0.88
C9orf3-221ENST00000489562 UPK3BQ9BT76 320 aa9.55□□□□□ -0.88
C9orf3-221ENST00000489562 TMEM243Q9BU79 118 aa9.55□□□□□ -0.88
C9orf3-221ENST00000489562 LINC01546A6NGU7 62 aa9.54□□□□□ -0.88
C9orf3-221ENST00000489562 G0S2P27469 103 aa9.54□□□□□ -0.88
C9orf3-221ENST00000489562 ORMDL2Q53FV1 153 aa9.54□□□□□ -0.88
C9orf3-221ENST00000489562 LGALS9CQ6DKI2 356 aa9.54□□□□□ -0.88
C9orf3-221ENST00000489562 CSMD3Q7Z407 3707 aa9.54□□□□□ -0.88
C9orf3-221ENST00000489562 H7C423 109 aa9.53□□□□□ -0.88
C9orf3-221ENST00000489562 LAGE3Q14657 143 aa9.53□□□□□ -0.88
C9orf3-221ENST00000489562 TMEM18Q96B42 140 aa9.53□□□□□ -0.88
C9orf3-221ENST00000489562 AP5S1Q9NUS5 200 aa9.53□□□□□ -0.88
C9orf3-221ENST00000489562 UBE2L6O14933 153 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BKO60814 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BJP06899 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 LINC00614P0C842 121 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 ESDP10768 282 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BOP23527 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BBP33778 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BDP58876 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BCP62807 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 SMAGPQ0VAQ4 97 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST2H2BEQ16778 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.52□□□□□ -0.89
C9orf3-221ENST00000489562 BAGE3Q86Y29 109 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BHQ93079 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BNQ99877 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 HIST1H2BMQ99879 126 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 CHCHD5Q9BSY4 110 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 CHCHD7Q9BUK0 85 aa9.52□□□□□ -0.89
C9orf3-221ENST00000489562 LINC01549A6NIU2 74 aa9.51□□□□□ -0.89
C9orf3-221ENST00000489562 NIT1Q86X76 327 aa9.51□□□□□ -0.89
C9orf3-221ENST00000489562 DEFB104AQ8WTQ1 72 aa9.51□□□□□ -0.89
C9orf3-221ENST00000489562 CHCHD1Q96BP2 118 aaKnown RBP9.51□□□□□ -0.89
C9orf3-221ENST00000489562 DYNC2H1Q8NCM8 4307 aaKnown RBP9.5□□□□□ -0.89
C9orf3-221ENST00000489562 SIVA1O15304 175 aa9.5□□□□□ -0.89
C9orf3-221ENST00000489562 RNASEKQ6P5S7 137 aaKnown RBP9.5□□□□□ -0.89
C9orf3-221ENST00000489562 WFDC10BQ8IUB3 73 aa9.5□□□□□ -0.89
C9orf3-221ENST00000489562 C20orf203Q8NBC4 194 aa9.5□□□□□ -0.89
C9orf3-221ENST00000489562 LINC00476Q8WZB0 136 aa9.5□□□□□ -0.89
C9orf3-221ENST00000489562 STARD9Q9P2P6 4700 aa9.49□□□□□ -0.89
C9orf3-221ENST00000489562 K7EP13 123 aa9.49□□□□□ -0.89
C9orf3-221ENST00000489562 DNAH10OSP0CZ25 163 aa9.49□□□□□ -0.89
C9orf3-221ENST00000489562 LINC01556Q5JQF7 62 aa9.49□□□□□ -0.89
C9orf3-221ENST00000489562 URB1-AS1Q96HZ7 61 aa9.49□□□□□ -0.89
C9orf3-221ENST00000489562 A0A087WX48 190 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 A0A1B0GUV1 79 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 TMEM262E9PQX1 116 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 ZNF25P17030 456 aaPredicted RBP9.48□□□□□ -0.89
C9orf3-221ENST00000489562 GAGE6Q13070 117 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 AMMECR1LQ6DCA0 310 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 MRPL52Q86TS9 123 aaKnown RBP9.48□□□□□ -0.89
C9orf3-221ENST00000489562 TIMM21Q9BVV7 248 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 Q9H8V8 135 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 CYSLTR1Q9Y271 337 aa9.48□□□□□ -0.89
C9orf3-221ENST00000489562 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.47□□□□□ -0.89
C9orf3-221ENST00000489562 IGKV2-29A2NJV5 120 aaPredicted RBP9.47□□□□□ -0.89
C9orf3-221ENST00000489562 HSBP1O75506 76 aa9.47□□□□□ -0.89
C9orf3-221ENST00000489562 SERF1AO75920 110 aa9.47□□□□□ -0.89
C9orf3-221ENST00000489562 FGF6P10767 208 aa9.47□□□□□ -0.89
C9orf3-221ENST00000489562 C2orf66Q6UXQ4 117 aa9.47□□□□□ -0.89
C9orf3-221ENST00000489562 SPANXA1Q9NS26 97 aa9.47□□□□□ -0.89
C9orf3-221ENST00000489562 CSDC2Q9Y534 153 aaKnown RBP9.47□□□□□ -0.89
C9orf3-221ENST00000489562 TRAV9-2A0A087WT02 112 aa9.46□□□□□ -0.9
C9orf3-221ENST00000489562 LY6G6CO95867 125 aa9.46□□□□□ -0.9
C9orf3-221ENST00000489562 HBDP02042 147 aa9.46□□□□□ -0.9
C9orf3-221ENST00000489562 BTF3P20290 206 aaKnown RBP9.46□□□□□ -0.9
C9orf3-221ENST00000489562 COA6Q5JTJ3 125 aaKnown RBP9.46□□□□□ -0.9
C9orf3-221ENST00000489562 C10orf126Q8N4M7 172 aa9.46□□□□□ -0.9
C9orf3-221ENST00000489562 TMEM101Q96IK0 257 aa9.46□□□□□ -0.9
C9orf3-221ENST00000489562 NPSP0C0P6 89 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 RBX1P62877 108 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 RPL39P62891 51 aaKnown RBP9.45□□□□□ -0.9
C9orf3-221ENST00000489562 MPV17L2Q567V2 206 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 TTC32Q5I0X7 151 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 DGAT2L7PQ6IED9 249 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 TOMM6Q96B49 74 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 UBE2D4Q9Y2X8 147 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 PYGO1Q9Y3Y4 419 aa9.45□□□□□ -0.9
C9orf3-221ENST00000489562 IGHV3-30P01768 117 aa9.44□□□□□ -0.9
C9orf3-221ENST00000489562 IGHV3-33P01772 117 aa9.44□□□□□ -0.9
C9orf3-221ENST00000489562 IGHV3-30-3P0DP02 117 aa9.44□□□□□ -0.9
C9orf3-221ENST00000489562 IGHV3-30-5P0DP03 117 aa9.44□□□□□ -0.9
C9orf3-221ENST00000489562 OR5A1Q8NGJ0 315 aa9.44□□□□□ -0.9
C9orf3-221ENST00000489562 NDUFA6P56556 154 aa9.43□□□□□ -0.9
C9orf3-221ENST00000489562 LINC00310P59036 64 aa9.43□□□□□ -0.9
C9orf3-221ENST00000489562 TIMM17AQ99595 171 aa9.43□□□□□ -0.9
C9orf3-221ENST00000489562 A0A096LNJ9 63 aa9.42□□□□□ -0.9
C9orf3-221ENST00000489562 LCE6AA0A183 80 aa9.42□□□□□ -0.9
C9orf3-221ENST00000489562 ANGP03950 147 aaKnown RBP9.42□□□□□ -0.9
C9orf3-221ENST00000489562 MRPS36P82909 103 aaKnown RBP9.42□□□□□ -0.9
C9orf3-221ENST00000489562 PAPPA-AS1Q5QFB9 102 aa9.42□□□□□ -0.9
C9orf3-221ENST00000489562 ERASQ7Z444 233 aa9.42□□□□□ -0.9
C9orf3-221ENST00000489562 Q8N976 141 aa9.42□□□□□ -0.9
C9orf3-221ENST00000489562 SCGB3A1Q96QR1 104 aa9.42□□□□□ -0.9
C9orf3-221ENST00000489562 PLECQ15149 4684 aaKnown RBP9.41□□□□□ -0.9
C9orf3-221ENST00000489562 IGLV4-60A0A075B6I1 120 aa9.41□□□□□ -0.9
C9orf3-221ENST00000489562 NBDYA0A0U1RRE5 68 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms