RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CCL20P78556 96 aa8.76□□□□□ -1.01
SQSTM1-208ENST00000485412 TMEM97Q5BJF2 176 aa8.76□□□□□ -1.01
SQSTM1-208ENST00000485412 CLRN3Q8NCR9 226 aa8.76□□□□□ -1.01
SQSTM1-208ENST00000485412 LYPD6BQ8NI32 183 aa8.76□□□□□ -1.01
SQSTM1-208ENST00000485412 SPACA4Q8TDM5 124 aa8.75□□□□□ -1.01
SQSTM1-208ENST00000485412 RNF185Q96GF1 192 aa8.75□□□□□ -1.01
SQSTM1-208ENST00000485412 IGHV3-64A0A075B6Q5 118 aa8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 CENPWQ5EE01 88 aa8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 C15orf56Q8N910 161 aa8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 FER1L6-AS1Q8NA97 138 aa8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 TMEM243Q9BU79 118 aa8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 AP5S1Q9NUS5 200 aa8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 TMA7Q9Y2S6 64 aaKnown RBP8.74□□□□□ -1.01
SQSTM1-208ENST00000485412 PHOX2AO14813 284 aa8.73□□□□□ -1.01
SQSTM1-208ENST00000485412 SCO1O75880 301 aa8.73□□□□□ -1.01
SQSTM1-208ENST00000485412 H2AFB1P0C5Y9 115 aa8.73□□□□□ -1.01
SQSTM1-208ENST00000485412 OR2D3Q8NGH3 330 aa8.73□□□□□ -1.01
SQSTM1-208ENST00000485412 C7orf33Q8WU49 177 aa8.73□□□□□ -1.01
SQSTM1-208ENST00000485412 C11orf52Q96A22 123 aa8.73□□□□□ -1.01
SQSTM1-208ENST00000485412 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.72□□□□□ -1.01
SQSTM1-208ENST00000485412 TRAV1-1A0A0B4J248 108 aa8.72□□□□□ -1.01
SQSTM1-208ENST00000485412 RAB19A4D1S5 217 aa8.72□□□□□ -1.01
SQSTM1-208ENST00000485412 C19orf71A6NCJ1 209 aa8.72□□□□□ -1.01
SQSTM1-208ENST00000485412 RASL11AQ6T310 242 aa8.72□□□□□ -1.01
SQSTM1-208ENST00000485412 GNG13Q9P2W3 67 aa8.72□□□□□ -1.01
SQSTM1-208ENST00000485412 TRAV8-4A0A0B4J246 113 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 IGKV3OR2-268A0A0C4DH90 116 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 A0A1B0GUV1 79 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 P01737 135 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 HIGD2BQ4VC39 106 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 LINC01600Q96MT4 127 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 PLAC8Q9NZF1 115 aa8.71□□□□□ -1.02
SQSTM1-208ENST00000485412 TRBV20OR9-2A0A075B6H5 130 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 GAGE12HA6NDE8 117 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 H7C1H1 209 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 COX6A2Q02221 97 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 UQCC3Q6UW78 93 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 LYZL1Q6UWQ5 148 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 PRSS3P2Q8NHM4 247 aa8.7□□□□□ -1.02
SQSTM1-208ENST00000485412 TRAV26-2A0A0B4J265 109 aa8.69□□□□□ -1.02
SQSTM1-208ENST00000485412 CACNG7P62955 275 aa8.69□□□□□ -1.02
SQSTM1-208ENST00000485412 PGLYRP4Q96LB8 373 aa8.69□□□□□ -1.02
SQSTM1-208ENST00000485412 NIT2Q9NQR4 276 aa8.69□□□□□ -1.02
SQSTM1-208ENST00000485412 IGKV2-24A0A0C4DH68 120 aa8.68□□□□□ -1.02
SQSTM1-208ENST00000485412 LOC105371267A0A1B0GV96 52 aa8.68□□□□□ -1.02
SQSTM1-208ENST00000485412 TEX46H3BTG2 121 aa8.68□□□□□ -1.02
SQSTM1-208ENST00000485412 NTF3P20783 257 aa8.68□□□□□ -1.02
SQSTM1-208ENST00000485412 AMTP48728 403 aa8.68□□□□□ -1.02
SQSTM1-208ENST00000485412 GTSF1Q8WW33 167 aa8.68□□□□□ -1.02
SQSTM1-208ENST00000485412 RPS20P60866 119 aaKnown RBP8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 WDR73Q6P4I2 378 aa8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 GATD1Q8NB37 220 aa8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 RPL39LQ96EH5 51 aaKnown RBP8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 SMDT1Q9H4I9 107 aa8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 MANBALQ9NQG1 85 aa8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 LPAP08519 4548 aa8.67□□□□□ -1.02
SQSTM1-208ENST00000485412 UBE2L6O14933 153 aa8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 GAS8-AS1O95177 125 aa8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 CTRLP40313 264 aa8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 GNG4P50150 75 aa8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 PRR3P79522 188 aaKnown RBP8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 COTL1Q14019 142 aa8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 MAJINQ3KP22 176 aa8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 CHCHD10Q8WYQ3 142 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-208ENST00000485412 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 A0A096LNI7 61 aa8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 A0A0J9YXV3 536 aa8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 IGKV2-29A2NJV5 120 aaPredicted RBP8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 IFNA1P01562 189 aa8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 TRGC1P0CF51 173 aa8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 RPS10P46783 165 aaKnown RBP8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 FOXA3P55318 350 aaPredicted RBP8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 LINC00526Q96FQ7 95 aa8.65□□□□□ -1.02
SQSTM1-208ENST00000485412 F2Z2F3 143 aa8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 NDUFS6O75380 124 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 PEA15Q15121 130 aa8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 REG3GQ6UW15 175 aa8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 STPG4Q8N801 248 aa8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 NUDT10Q8NFP7 164 aa8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 NUDT11Q96G61 164 aa8.64□□□□□ -1.03
SQSTM1-208ENST00000485412 GVQW2A0A096LPI5 108 aaPredicted RBP8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 K7EN84 100 aa8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 TAGLN2P37802 199 aaKnown RBP8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 MEF2BQ02080 365 aaPredicted RBP8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 FOXI1Q12951 378 aa8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 TWIST1Q15672 202 aa8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 RNASE7Q9H1E1 156 aaKnown RBP8.63□□□□□ -1.03
SQSTM1-208ENST00000485412 TMEM218A2RU14 115 aa8.62□□□□□ -1.03
SQSTM1-208ENST00000485412 CFAP161Q6P656 301 aa8.62□□□□□ -1.03
SQSTM1-208ENST00000485412 CNFNQ9BYD5 112 aa8.62□□□□□ -1.03
SQSTM1-208ENST00000485412 XKRY2A2RUG3 117 aa8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 FGF6P10767 208 aa8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 KRTAP10-8P60410 259 aa8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 SRSF3P84103 164 aaKnown RBP8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 C10orf91Q5T1B1 145 aa8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 RNASEKQ6P5S7 137 aaKnown RBP8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 SPINK6Q6UWN8 80 aa8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 SMIM12Q96EX1 92 aa8.61□□□□□ -1.03
SQSTM1-208ENST00000485412 FAM231BA6NCW3 169 aa8.6□□□□□ -1.03
SQSTM1-208ENST00000485412 BCL2P10415 239 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms