RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 COX6A2Q02221 97 aa10.76□□□□□ -0.69
VIM-204ENST00000478746 MAJINQ3KP22 176 aa10.76□□□□□ -0.69
VIM-204ENST00000478746 SPINK6Q6UWN8 80 aa10.76□□□□□ -0.69
VIM-204ENST00000478746 GZMBP10144 247 aa10.75□□□□□ -0.69
VIM-204ENST00000478746 OR10AG1Q8NH19 301 aa10.75□□□□□ -0.69
VIM-204ENST00000478746 C11orf52Q96A22 123 aa10.75□□□□□ -0.69
VIM-204ENST00000478746 S100A9P06702 114 aaKnown RBP10.74□□□□□ -0.69
VIM-204ENST00000478746 IQCJQ1A5X6 159 aa10.74□□□□□ -0.69
VIM-204ENST00000478746 MED9Q9NWA0 146 aa10.74□□□□□ -0.69
VIM-204ENST00000478746 IGHV1-24A0A0C4DH33 117 aa10.73□□□□□ -0.69
VIM-204ENST00000478746 IGKV2-24A0A0C4DH68 120 aa10.73□□□□□ -0.69
VIM-204ENST00000478746 STPG4Q8N801 248 aa10.73□□□□□ -0.69
VIM-204ENST00000478746 C20orf203Q8NBC4 194 aa10.73□□□□□ -0.69
VIM-204ENST00000478746 TMEM250H0YL14 139 aa10.72□□□□□ -0.69
VIM-204ENST00000478746 NDUFS6O75380 124 aaKnown RBP10.72□□□□□ -0.69
VIM-204ENST00000478746 RPS10P46783 165 aaKnown RBP10.72□□□□□ -0.69
VIM-204ENST00000478746 PEA15Q15121 130 aa10.72□□□□□ -0.69
VIM-204ENST00000478746 PRSS3P2Q8NHM4 247 aa10.72□□□□□ -0.69
VIM-204ENST00000478746 LPAP08519 4548 aa10.72□□□□□ -0.69
VIM-204ENST00000478746 MUC21A0A0G2JKD1 596 aa10.71□□□□□ -0.69
VIM-204ENST00000478746 CXCL1P09341 107 aa10.71□□□□□ -0.69
VIM-204ENST00000478746 RPL35P42766 123 aaKnown RBP10.71□□□□□ -0.69
VIM-204ENST00000478746 CEBPGP53567 150 aa10.71□□□□□ -0.69
VIM-204ENST00000478746 SPANXN1Q5VSR9 72 aa10.71□□□□□ -0.69
VIM-204ENST00000478746 CFAP161Q6P656 301 aa10.71□□□□□ -0.69
VIM-204ENST00000478746 IGLV4-60A0A075B6I1 120 aa10.7□□□□□ -0.7
VIM-204ENST00000478746 MUC21A0A140T8X8 626 aa10.7□□□□□ -0.7
VIM-204ENST00000478746 A0A1B0GUV1 79 aa10.7□□□□□ -0.7
VIM-204ENST00000478746 SNAI2O43623 268 aa10.7□□□□□ -0.7
VIM-204ENST00000478746 SSBP4Q9BWG4 385 aaPredicted RBP10.7□□□□□ -0.7
VIM-204ENST00000478746 RAB19A4D1S5 217 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 SRP19P09132 144 aaKnown RBP10.69□□□□□ -0.7
VIM-204ENST00000478746 OR5AL1P0C617 328 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 SMIM17P0DL12 118 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 SSTP61278 116 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 SRSF9Q13242 221 aaKnown RBP eCLIP10.69□□□□□ -0.7
VIM-204ENST00000478746 BAGE2Q86Y30 109 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 GFRA4Q9GZZ7 299 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 SMDT1Q9H4I9 107 aa10.69□□□□□ -0.7
VIM-204ENST00000478746 GNG4P50150 75 aa10.68□□□□□ -0.7
VIM-204ENST00000478746 CENPWQ5EE01 88 aa10.68□□□□□ -0.7
VIM-204ENST00000478746 C15orf56Q8N910 161 aa10.68□□□□□ -0.7
VIM-204ENST00000478746 SRSF3P84103 164 aaKnown RBP10.67□□□□□ -0.7
VIM-204ENST00000478746 TMEM243Q9BU79 118 aa10.67□□□□□ -0.7
VIM-204ENST00000478746 GAGE12HA6NDE8 117 aa10.66□□□□□ -0.7
VIM-204ENST00000478746 HIGD2BQ4VC39 106 aa10.66□□□□□ -0.7
VIM-204ENST00000478746 AP1S3Q96PC3 154 aa10.66□□□□□ -0.7
VIM-204ENST00000478746 SMIM7Q9BQ49 75 aa10.66□□□□□ -0.7
VIM-204ENST00000478746 Q6ZRP5 223 aa10.65□□□□□ -0.7
VIM-204ENST00000478746 COMMD7Q86VX2 200 aa10.65□□□□□ -0.7
VIM-204ENST00000478746 MLST8Q9BVC4 326 aa10.65□□□□□ -0.7
VIM-204ENST00000478746 TRBV20OR9-2A0A075B6H5 130 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 A0A096LNI7 61 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 ZNF727A8MUV8 499 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 C9JQL5 133 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 SMIM12Q96EX1 92 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 KRTAP9-2Q9BYQ4 174 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 LINC00474Q9P2X8 69 aa10.64□□□□□ -0.71
VIM-204ENST00000478746 LINC00862A6NCI5 91 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 H7C1H1 209 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 M0QY20 66 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 UBE2L6O14933 153 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 FAM74A3Q4VXF1 159 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 UQCC3Q6UW78 93 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 BIN3Q9NQY0 253 aa10.63□□□□□ -0.71
VIM-204ENST00000478746 MGPP08493 103 aa10.62□□□□□ -0.71
VIM-204ENST00000478746 IGKV3OR2-268A0A0C4DH90 116 aa10.61□□□□□ -0.71
VIM-204ENST00000478746 FAM231BA6NCW3 169 aa10.61□□□□□ -0.71
VIM-204ENST00000478746 TMEM241Q24JQ0 296 aa10.6□□□□□ -0.71
VIM-204ENST00000478746 SUMO4Q6EEV6 95 aa10.6□□□□□ -0.71
VIM-204ENST00000478746 OCC1Q8TAD7 63 aa10.6□□□□□ -0.71
VIM-204ENST00000478746 GVQW2A0A096LPI5 108 aaPredicted RBP10.59□□□□□ -0.71
VIM-204ENST00000478746 PGLYRP4Q96LB8 373 aa10.59□□□□□ -0.71
VIM-204ENST00000478746 TPPP3Q9BW30 176 aa10.59□□□□□ -0.71
VIM-204ENST00000478746 NAT8Q9UHE5 227 aa10.59□□□□□ -0.71
VIM-204ENST00000478746 MUC2Q02817 5179 aa10.58□□□□□ -0.72
VIM-204ENST00000478746 AMTP48728 403 aa10.58□□□□□ -0.72
VIM-204ENST00000478746 RASL11AQ6T310 242 aa10.58□□□□□ -0.72
VIM-204ENST00000478746 CHCHD10Q8WYQ3 142 aaPredicted RBP10.58□□□□□ -0.72
VIM-204ENST00000478746 PKIGQ9Y2B9 76 aa10.58□□□□□ -0.72
VIM-204ENST00000478746 K7EN84 100 aa10.57□□□□□ -0.72
VIM-204ENST00000478746 LINC01551Q86U37 167 aa10.57□□□□□ -0.72
VIM-204ENST00000478746 FER1L6-AS1Q8NA97 138 aa10.57□□□□□ -0.72
VIM-204ENST00000478746 TMEM218A2RU14 115 aa10.56□□□□□ -0.72
VIM-204ENST00000478746 IGLC6P0CF74 106 aa10.56□□□□□ -0.72
VIM-204ENST00000478746 CACNG7P62955 275 aa10.56□□□□□ -0.72
VIM-204ENST00000478746 COTL1Q14019 142 aa10.56□□□□□ -0.72
VIM-204ENST00000478746 ADIRFQ15847 76 aa10.56□□□□□ -0.72
VIM-204ENST00000478746 NIT2Q9NQR4 276 aa10.56□□□□□ -0.72
VIM-204ENST00000478746 C19orf71A6NCJ1 209 aa10.55□□□□□ -0.72
VIM-204ENST00000478746 RPS20P60866 119 aaKnown RBP10.55□□□□□ -0.72
VIM-204ENST00000478746 RPL23P62829 140 aaKnown RBP10.55□□□□□ -0.72
VIM-204ENST00000478746 F8W036 122 aa10.54□□□□□ -0.72
VIM-204ENST00000478746 ZNF664Q8N3J9 261 aa10.54□□□□□ -0.72
VIM-204ENST00000478746 NUDT10Q8NFP7 164 aa10.54□□□□□ -0.72
VIM-204ENST00000478746 OR2D3Q8NGH3 330 aa10.54□□□□□ -0.72
VIM-204ENST00000478746 NUDT11Q96G61 164 aa10.54□□□□□ -0.72
VIM-204ENST00000478746 RNASE7Q9H1E1 156 aaKnown RBP10.54□□□□□ -0.72
VIM-204ENST00000478746 XKRY2A2RUG3 117 aa10.53□□□□□ -0.72
VIM-204ENST00000478746 GATCO43716 136 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms