RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ARHGAP21Q5T5U3 1957 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 ANKRD50Q9ULJ7 1429 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 PTPRSQ13332 1948 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 LTBP1Q14766 1721 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 KDM6BO15054 1643 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 NYNRINQ9P2P1 1898 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 IGHV3OR16-8A0A075B7F1 116 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 TRAV12-1A0A0B4J245 112 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 A0A1W2PNM2 257 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 CEBPZOSA8MTT3 80 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 C10orf142B7Z368 130 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 UBE2D1P51668 147 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 PLGLAQ15195 96 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 Q6JHZ5 121 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 UBALD1Q8TB05 177 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 PROK2Q9HC23 129 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 TMEM14BQ9NUH8 114 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 PSENENQ9NZ42 101 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 LAMB1P07942 1786 aa2.91□□□□□ -1.94
CCDC88A-210ENST00000468534 MGAMO43451 1857 aa2.9□□□□□ -1.94
CCDC88A-210ENST00000468534 MUC22E2RYF6 1773 aaPredicted RBP2.9□□□□□ -1.94
CCDC88A-210ENST00000468534 LOC101927531A0A1B0GV80 90 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 C2orf70A6NJV1 201 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 WISP3O95389 354 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 KRTAP25-1Q3LHN0 102 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 C2orf82Q6UX34 121 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 ANAPC11Q9NYG5 84 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 LHFPL6Q9Y693 200 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 KIF25-AS1Q9Y6Z4 181 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 SCN4AP35499 1836 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 PLXNA2O75051 1894 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 PLXNA1Q9UIW2 1896 aa2.9□□□□□ -1.95
CCDC88A-210ENST00000468534 SLIT2O94813 1529 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 COL4A4P53420 1690 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 ADAMTS7Q9UKP4 1686 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 CASP8AP2Q9UKL3 1982 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 A0A0J9YX75 114 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 ZNF815PA8K554 130 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 MDKP21741 143 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 VWDEQ8N2E2 1590 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 C9orf163Q8N9P6 203 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 FAM103A1Q9BTL3 118 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 MAST1Q9Y2H9 1570 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 PCNX2A6NKB5 2137 aa2.89□□□□□ -1.95
CCDC88A-210ENST00000468534 LCTP09848 1927 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 GREB1Q4ZG55 1949 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 TRBV6-7A0A0A0MS04 114 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 TRBV10-1A0A0K0K1A3 114 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 ZNF861PO60384 105 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 IGHV3-33P01772 117 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 CISD3P0C7P0 127 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 IFI27P40305 119 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 CSAG1Q6PB30 78 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 NDUFA4L2Q9NRX3 87 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 UBE2D4Q9Y2X8 147 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 KIAA0556O60303 1618 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 TOP2BQ02880 1626 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 CD163L1Q9NR16 1453 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 TANC1Q9C0D5 1861 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 IFT172Q9UG01 1749 aa2.88□□□□□ -1.95
CCDC88A-210ENST00000468534 CDC42BPGQ6DT37 1551 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 SIPA1L3O60292 1781 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 EXPH5Q8NEV8 1989 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 TRBV6-8A0A0A6YYG3 113 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 CLPSL1A2RUU4 121 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 ERHP84090 104 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 CLECL1Q8IZS7 167 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 ZNF142P52746 1687 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 CRYBG1Q9Y4K1 1723 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 CDC42BPBQ9Y5S2 1711 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 KIAA0586Q9BVV6 1533 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 KIAA1549Q9HCM3 1950 aa2.87□□□□□ -1.95
CCDC88A-210ENST00000468534 MUC4Q99102 2169 aa2.86□□□□□ -1.95
CCDC88A-210ENST00000468534 TMSB15BA0A087X1C1 80 aa2.86□□□□□ -1.95
CCDC88A-210ENST00000468534 PSCAO43653 123 aa2.86□□□□□ -1.95
CCDC88A-210ENST00000468534 C1orf137Q5JT78 98 aa2.86□□□□□ -1.95
CCDC88A-210ENST00000468534 KPRPQ5T749 579 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-210ENST00000468534 GNG13Q9P2W3 67 aa2.86□□□□□ -1.95
CCDC88A-210ENST00000468534 PREX1Q8TCU6 1659 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 ALS2Q96Q42 1657 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 H3BVH4 76 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 HMGN4O00479 90 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 PRB2P02812 416 aaPredicted RBP2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 ELOF1P60002 83 aaKnown RBP2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 ATP5EP2Q5VTU8 51 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 MED12LQ86YW9 2145 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 EML5Q05BV3 1969 aa2.85□□□□□ -1.95
CCDC88A-210ENST00000468534 SLX4Q8IY92 1834 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 MYO16Q9Y6X6 1858 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 ARMS2P0C7Q2 107 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 SAA2P0DJI9 122 aaPredicted RBP2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 SPINT3P49223 89 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 CNBPP62633 177 aaKnown RBP2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 DEFB107AQ8IZN7 70 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 DMAC1Q96GE9 116 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 LENEPQ9Y5L5 61 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 MICAL3Q7RTP6 2002 aa2.84□□□□□ -1.95
CCDC88A-210ENST00000468534 MALRD1Q5VYJ5 2156 aa2.84□□□□□ -1.96
CCDC88A-210ENST00000468534 KIAA1549LQ6ZVL6 1849 aa2.84□□□□□ -1.96
CCDC88A-210ENST00000468534 ATP7BP35670 1465 aa2.84□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms