RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 TMEM222Q9H0R3 208 aa2.5□□□□□ -2.01
HMGB1-207ENST00000468384 GTSF1LQ9H1H1 148 aa2.5□□□□□ -2.01
HMGB1-207ENST00000468384 MED28Q9H204 178 aa2.5□□□□□ -2.01
HMGB1-207ENST00000468384 ZNF331Q9NQX6 463 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-207ENST00000468384 LINC00474Q9P2X8 69 aa2.5□□□□□ -2.01
HMGB1-207ENST00000468384 IGLV10-54A0A075B6I4 117 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 A0A1W2PRE2 83 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 OR4C45A6NMZ5 311 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 RBFOX2O43251 390 aaKnown RBP eCLIP2.49□□□□□ -2.01
HMGB1-207ENST00000468384 SFTA3P0C7M3 94 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 INPP1P49441 399 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 WT1-ASQ06250 92 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 Q0VG73 95 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 CLVS1Q8IUQ0 354 aaPredicted RBP2.49□□□□□ -2.01
HMGB1-207ENST00000468384 SLC25A29Q8N8R3 303 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 GNPDA2Q8TDQ7 276 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 GPER1Q99527 375 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 TTTY10Q9BZA0 68 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 C8orf17Q9NRJ1 99 aa2.49□□□□□ -2.01
HMGB1-207ENST00000468384 POLR2JP52435 117 aaKnown RBP2.48□□□□□ -2.01
HMGB1-207ENST00000468384 FABP9Q0Z7S8 132 aa2.48□□□□□ -2.01
HMGB1-207ENST00000468384 AKR1C8PQ5T2L2 129 aa2.48□□□□□ -2.01
HMGB1-207ENST00000468384 LAIR2Q6ISS4 152 aa2.48□□□□□ -2.01
HMGB1-207ENST00000468384 Q6ZQT7 251 aa2.48□□□□□ -2.01
HMGB1-207ENST00000468384 NTM-AS1Q6ZSK4 140 aa2.48□□□□□ -2.01
HMGB1-207ENST00000468384 LYRM2Q9NU23 88 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-207ENST00000468384 MRPL16Q9NX20 251 aaKnown RBP2.48□□□□□ -2.01
HMGB1-207ENST00000468384 A0A096LNJ9 63 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 C9JQL5 133 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-207ENST00000468384 DAPP51397 102 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 SYCNQ0VAF6 134 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 KRTAP13-2Q52LG2 175 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 RNASE13Q5GAN3 156 aaKnown RBP2.47□□□□□ -2.01
HMGB1-207ENST00000468384 OR8J3Q8NGG0 315 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 PYURFQ96I23 114 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 CNBD2Q96M20 576 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 PFDN5Q99471 154 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 TSSK6Q9BXA6 273 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 CCDC90BQ9GZT6 254 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 SH3BGRL3Q9H299 93 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 ZNF492Q9P255 531 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 PAIP2BQ9ULR5 123 aaKnown RBP2.47□□□□□ -2.01
HMGB1-207ENST00000468384 TP53TG3Q9ULZ0 132 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 SSR3Q9UNL2 185 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 UBE2D4Q9Y2X8 147 aa2.47□□□□□ -2.01
HMGB1-207ENST00000468384 RGS5O15539 181 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 OR7C2O60412 319 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 CDRT1O95170 752 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 APOMO95445 188 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 LTAP01374 205 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 APCSP02743 223 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 S100A1P23297 94 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 OR10J1P30954 320 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 TGFBR1P36897 503 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 AKR1C3P42330 323 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 TNFAIP8L3Q5GJ75 292 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 ENHOQ6UWT2 76 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 ORMDL3Q8N138 153 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 RNASE11Q8TAA1 199 aaKnown RBP2.46□□□□□ -2.02
HMGB1-207ENST00000468384 SEC22CQ9BRL7 303 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 PBDC1Q9BVG4 233 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 YIPF3Q9GZM5 350 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 OR2D2Q9H210 308 aa2.46□□□□□ -2.02
HMGB1-207ENST00000468384 LST1O00453 97 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 SLC17A3O00476 420 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 BPY2O14599 106 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 SCO1O75880 301 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 CXorf1O96002 111 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 TRAPPC2P0DI81 140 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 TRAPPC2BP0DI82 140 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 NUDT2P50583 147 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 ELOBQ15370 118 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 RHEBQ15382 184 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 LUZP6Q538Z0 58 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 EXOC3-AS1Q8N2X6 119 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 COMMD5Q9GZQ3 224 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 CYSLTR1Q9Y271 337 aa2.45□□□□□ -2.02
HMGB1-207ENST00000468384 A0A1W2PNN7 141 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 RIIAD1A6NNX1 92 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 A8MUN3 132 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 LINC00587B1AMM8 73 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 COX7A2LO14548 114 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 NDUFC2O95298 119 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 IFNGP01579 166 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 SMIM17P0DL12 118 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 RNASE2P10153 161 aaKnown RBP2.44□□□□□ -2.02
HMGB1-207ENST00000468384 CKS1BP61024 79 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 KRTAP26-1Q6PEX3 210 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 LINC01551Q86U37 167 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 GPR82Q96P67 336 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 KCNIP2Q9NS61 270 aa2.44□□□□□ -2.02
HMGB1-207ENST00000468384 A0A1B0GV90 55 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 TMEM223A0PJW6 202 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 GSTZ1O43708 216 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-207ENST00000468384 PFDN1O60925 122 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 SELENOWP63302 87 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 DEFB116Q30KQ4 102 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 Q6ZS49 121 aa2.43□□□□□ -2.02
HMGB1-207ENST00000468384 PHF5AQ7RTV0 110 aaKnown RBP2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms