RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 TWIST1Q15672 202 aa14.28□□□□□ -0.12
LIME1-203ENST00000465591 C1orf43Q9BWL3 253 aa14.27□□□□□ -0.13
LIME1-203ENST00000465591 IGHV1-24A0A0C4DH33 117 aa14.26□□□□□ -0.13
LIME1-203ENST00000465591 CRPP02741 224 aa14.26□□□□□ -0.13
LIME1-203ENST00000465591 FOXA3P55318 350 aaPredicted RBP14.26□□□□□ -0.13
LIME1-203ENST00000465591 CLPSL2Q6UWE3 100 aa14.26□□□□□ -0.13
LIME1-203ENST00000465591 NIT2Q9NQR4 276 aa14.26□□□□□ -0.13
LIME1-203ENST00000465591 TRAV26-2A0A0B4J265 109 aa14.25□□□□□ -0.13
LIME1-203ENST00000465591 PKIAP61925 76 aa14.25□□□□□ -0.13
LIME1-203ENST00000465591 PNRC1Q12796 327 aaPredicted RBP14.25□□□□□ -0.13
LIME1-203ENST00000465591 Q6ZSA8 131 aa14.25□□□□□ -0.13
LIME1-203ENST00000465591 GATD1Q8NB37 220 aa14.25□□□□□ -0.13
LIME1-203ENST00000465591 PRR34Q9NV39 138 aa14.25□□□□□ -0.13
LIME1-203ENST00000465591 TMEM218A2RU14 115 aa14.24□□□□□ -0.13
LIME1-203ENST00000465591 LINC00269Q8N2A0 174 aa14.24□□□□□ -0.13
LIME1-203ENST00000465591 TSKUQ8WUA8 353 aa14.24□□□□□ -0.13
LIME1-203ENST00000465591 FRZBQ92765 325 aa14.24□□□□□ -0.13
LIME1-203ENST00000465591 GFRA4Q9GZZ7 299 aa14.24□□□□□ -0.13
LIME1-203ENST00000465591 FAM231BA6NCW3 169 aa14.23□□□□□ -0.13
LIME1-203ENST00000465591 KRTAP26-1Q6PEX3 210 aa14.23□□□□□ -0.13
LIME1-203ENST00000465591 V9GYV3 84 aa14.23□□□□□ -0.13
LIME1-203ENST00000465591 FLG2Q5D862 2391 aaPredicted RBP14.23□□□□□ -0.13
LIME1-203ENST00000465591 F8W036 122 aa14.22□□□□□ -0.13
LIME1-203ENST00000465591 MIAQ16674 131 aa14.22□□□□□ -0.13
LIME1-203ENST00000465591 C20orf203Q8NBC4 194 aa14.22□□□□□ -0.13
LIME1-203ENST00000465591 BORCS7Q96B45 105 aa14.22□□□□□ -0.13
LIME1-203ENST00000465591 PGLYRP4Q96LB8 373 aa14.22□□□□□ -0.13
LIME1-203ENST00000465591 RPL39LQ96EH5 51 aaKnown RBP14.21□□□□□ -0.13
LIME1-203ENST00000465591 TMEM243Q9BU79 118 aa14.21□□□□□ -0.13
LIME1-203ENST00000465591 SRRM2Q9UQ35 2752 aaKnown RBP14.2□□□□□ -0.14
LIME1-203ENST00000465591 IGLV4-60A0A075B6I1 120 aa14.2□□□□□ -0.14
LIME1-203ENST00000465591 PPP1R2P9O14990 202 aa14.2□□□□□ -0.14
LIME1-203ENST00000465591 HLA-DQA1P01909 254 aa14.2□□□□□ -0.14
LIME1-203ENST00000465591 USP17L23D6RBM5 183 aa14.19□□□□□ -0.14
LIME1-203ENST00000465591 INAFM2P0DMQ5 153 aa14.19□□□□□ -0.14
LIME1-203ENST00000465591 SEC11CQ9BY50 192 aa14.19□□□□□ -0.14
LIME1-203ENST00000465591 HIGD1CA8MV81 97 aa14.18□□□□□ -0.14
LIME1-203ENST00000465591 MT-ND4LP03901 98 aa14.18□□□□□ -0.14
LIME1-203ENST00000465591 SMIM15Q7Z3B0 74 aa14.18□□□□□ -0.14
LIME1-203ENST00000465591 REG3AQ06141 175 aa14.17□□□□□ -0.14
LIME1-203ENST00000465591 COTL1Q14019 142 aa14.17□□□□□ -0.14
LIME1-203ENST00000465591 NAT8BQ9UHF3 227 aa14.17□□□□□ -0.14
LIME1-203ENST00000465591 IGLV10-54A0A075B6I4 117 aa14.16□□□□□ -0.14
LIME1-203ENST00000465591 A0A1B0GUT8 65 aa14.16□□□□□ -0.14
LIME1-203ENST00000465591 A0A1B0GUV1 79 aa14.16□□□□□ -0.14
LIME1-203ENST00000465591 GAS8-AS1O95177 125 aa14.16□□□□□ -0.14
LIME1-203ENST00000465591 AMTP48728 403 aa14.16□□□□□ -0.14
LIME1-203ENST00000465591 ANAPC16Q96DE5 110 aa14.16□□□□□ -0.14
LIME1-203ENST00000465591 FAM229AH3BQW9 127 aa14.15□□□□□ -0.14
LIME1-203ENST00000465591 PRSS1P07477 247 aa14.15□□□□□ -0.14
LIME1-203ENST00000465591 ADCYAP1P18509 176 aa14.15□□□□□ -0.14
LIME1-203ENST00000465591 C14orf177Q52M58 125 aa14.15□□□□□ -0.14
LIME1-203ENST00000465591 SMIM27A0A1W2PRY6 76 aa14.14□□□□□ -0.15
LIME1-203ENST00000465591 RIGQ13278 110 aa14.14□□□□□ -0.15
LIME1-203ENST00000465591 SCXQ7RTU7 201 aa14.14□□□□□ -0.15
LIME1-203ENST00000465591 NUP35Q8NFH5 326 aa14.14□□□□□ -0.15
LIME1-203ENST00000465591 MYCBP2O75592 4640 aa14.14□□□□□ -0.15
LIME1-203ENST00000465591 SDHAF1A6NFY7 115 aa14.11□□□□□ -0.15
LIME1-203ENST00000465591 UBE2L6O14933 153 aa14.11□□□□□ -0.15
LIME1-203ENST00000465591 C10orf91Q5T1B1 145 aa14.11□□□□□ -0.15
LIME1-203ENST00000465591 RNF185Q96GF1 192 aa14.11□□□□□ -0.15
LIME1-203ENST00000465591 CARHSP1Q9Y2V2 147 aaKnown RBP14.1□□□□□ -0.15
LIME1-203ENST00000465591 DMBT1Q9UGM3 2413 aaPredicted RBP14.1□□□□□ -0.15
LIME1-203ENST00000465591 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.09□□□□□ -0.15
LIME1-203ENST00000465591 A0A1B0GW15 77 aa14.09□□□□□ -0.15
LIME1-203ENST00000465591 IGKV2-29A2NJV5 120 aaPredicted RBP14.09□□□□□ -0.15
LIME1-203ENST00000465591 LINC00528Q8N1L1 170 aa14.09□□□□□ -0.15
LIME1-203ENST00000465591 CHAC1Q9BUX1 264 aa14.09□□□□□ -0.15
LIME1-203ENST00000465591 CTDSP1Q9GZU7 261 aa14.09□□□□□ -0.15
LIME1-203ENST00000465591 TMEM191AQ9H0A3 160 aa14.09□□□□□ -0.15
LIME1-203ENST00000465591 TRAV8-4A0A0B4J246 113 aa14.08□□□□□ -0.16
LIME1-203ENST00000465591 TRBV6-5A0A0K0K1A5 114 aa14.08□□□□□ -0.16
LIME1-203ENST00000465591 NCR2O95944 276 aa14.08□□□□□ -0.16
LIME1-203ENST00000465591 NDUFA5Q16718 116 aa14.08□□□□□ -0.16
LIME1-203ENST00000465591 HERC1Q15751 4861 aa14.07□□□□□ -0.16
LIME1-203ENST00000465591 S100A8P05109 93 aa14.07□□□□□ -0.16
LIME1-203ENST00000465591 RAB4AP20338 218 aa14.07□□□□□ -0.16
LIME1-203ENST00000465591 RPS10P46783 165 aaKnown RBP14.07□□□□□ -0.16
LIME1-203ENST00000465591 AMN1Q8IY45 258 aa14.07□□□□□ -0.16
LIME1-203ENST00000465591 CIRBP-AS1Q8TBR5 109 aa14.07□□□□□ -0.16
LIME1-203ENST00000465591 APCSP02743 223 aa14.06□□□□□ -0.16
LIME1-203ENST00000465591 IGKV3OR2-268A0A0C4DH90 116 aa14.05□□□□□ -0.16
LIME1-203ENST00000465591 DGAT2L7PQ6IED9 249 aa14.05□□□□□ -0.16
LIME1-203ENST00000465591 C9orf163Q8N9P6 203 aa14.05□□□□□ -0.16
LIME1-203ENST00000465591 IMMP2LQ96T52 175 aa14.05□□□□□ -0.16
LIME1-203ENST00000465591 SMKR1H3BMG3 65 aa14.04□□□□□ -0.16
LIME1-203ENST00000465591 I3L3M4 83 aa14.04□□□□□ -0.16
LIME1-203ENST00000465591 TSHBP01222 138 aa14.04□□□□□ -0.16
LIME1-203ENST00000465591 FGF6P10767 208 aa14.04□□□□□ -0.16
LIME1-203ENST00000465591 PMCHP20382 165 aa14.04□□□□□ -0.16
LIME1-203ENST00000465591 TMEM242Q9NWH2 141 aa14.04□□□□□ -0.16
LIME1-203ENST00000465591 APOC3P02656 99 aa14.03□□□□□ -0.16
LIME1-203ENST00000465591 CAMPP49913 170 aa14.03□□□□□ -0.16
LIME1-203ENST00000465591 POLR2KP53803 58 aaKnown RBP14.03□□□□□ -0.16
LIME1-203ENST00000465591 RHEBQ15382 184 aa14.03□□□□□ -0.16
LIME1-203ENST00000465591 AMMECR1LQ6DCA0 310 aa14.03□□□□□ -0.16
LIME1-203ENST00000465591 MRPL54Q6P161 138 aaKnown RBP14.03□□□□□ -0.16
LIME1-203ENST00000465591 RNASEKQ6P5S7 137 aaKnown RBP14.03□□□□□ -0.16
LIME1-203ENST00000465591 ATP5L2Q7Z4Y8 100 aa14.03□□□□□ -0.16
LIME1-203ENST00000465591 CLRN3Q8NCR9 226 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms