RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 CCL20P78556 96 aa13.7□□□□□ -0.22
CPNE1-220ENST00000458038 DPH3P1Q9H4G8 78 aa13.7□□□□□ -0.22
CPNE1-220ENST00000458038 A0A087WYN8 130 aa13.69□□□□□ -0.22
CPNE1-220ENST00000458038 GNG4P50150 75 aa13.69□□□□□ -0.22
CPNE1-220ENST00000458038 RAB5CP51148 216 aa13.69□□□□□ -0.22
CPNE1-220ENST00000458038 COTL1Q14019 142 aa13.69□□□□□ -0.22
CPNE1-220ENST00000458038 IFNA1P01562 189 aa13.68□□□□□ -0.22
CPNE1-220ENST00000458038 SLPIP03973 132 aa13.68□□□□□ -0.22
CPNE1-220ENST00000458038 SULT1A2P50226 295 aa13.68□□□□□ -0.22
CPNE1-220ENST00000458038 SPACA4Q8TDM5 124 aa13.68□□□□□ -0.22
CPNE1-220ENST00000458038 PDE6DO43924 150 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 NTF3P20783 257 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 AMTP48728 403 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 LYZL1Q6UWQ5 148 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 C9orf62Q8N4C0 152 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 C7orf33Q8WU49 177 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 GFRA4Q9GZZ7 299 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 PLAC8Q9NZF1 115 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 UBR4Q5T4S7 5183 aa13.67□□□□□ -0.22
CPNE1-220ENST00000458038 EIF5AL1Q6IS14 154 aaKnown RBP13.66□□□□□ -0.22
CPNE1-220ENST00000458038 RAB19A4D1S5 217 aa13.64□□□□□ -0.23
CPNE1-220ENST00000458038 RPS10P46783 165 aaKnown RBP13.64□□□□□ -0.23
CPNE1-220ENST00000458038 MEF2BQ02080 365 aaPredicted RBP13.64□□□□□ -0.23
CPNE1-220ENST00000458038 CHTF8P0CG12 524 aa13.63□□□□□ -0.23
CPNE1-220ENST00000458038 GAGE12HA6NDE8 117 aa13.62□□□□□ -0.23
CPNE1-220ENST00000458038 CTRLP40313 264 aa13.62□□□□□ -0.23
CPNE1-220ENST00000458038 C15orf56Q8N910 161 aa13.62□□□□□ -0.23
CPNE1-220ENST00000458038 CNFNQ9BYD5 112 aa13.62□□□□□ -0.23
CPNE1-220ENST00000458038 H7C423 109 aa13.61□□□□□ -0.23
CPNE1-220ENST00000458038 NDUFS6O75380 124 aaKnown RBP13.61□□□□□ -0.23
CPNE1-220ENST00000458038 NCR2O95944 276 aa13.61□□□□□ -0.23
CPNE1-220ENST00000458038 MED9Q9NWA0 146 aa13.61□□□□□ -0.23
CPNE1-220ENST00000458038 COX6A2Q02221 97 aa13.6□□□□□ -0.23
CPNE1-220ENST00000458038 TWIST1Q15672 202 aa13.6□□□□□ -0.23
CPNE1-220ENST00000458038 AMMECR1LQ6DCA0 310 aa13.6□□□□□ -0.23
CPNE1-220ENST00000458038 TRBV20OR9-2A0A075B6H5 130 aa13.59□□□□□ -0.23
CPNE1-220ENST00000458038 PHOX2AO14813 284 aa13.59□□□□□ -0.23
CPNE1-220ENST00000458038 TEX261Q6UWH6 196 aa13.59□□□□□ -0.23
CPNE1-220ENST00000458038 NUDT10Q8NFP7 164 aa13.59□□□□□ -0.23
CPNE1-220ENST00000458038 NUDT11Q96G61 164 aa13.59□□□□□ -0.23
CPNE1-220ENST00000458038 PKIGQ9Y2B9 76 aa13.59□□□□□ -0.23
CPNE1-220ENST00000458038 TAGLN2P37802 199 aaKnown RBP13.58□□□□□ -0.24
CPNE1-220ENST00000458038 SMIM15Q7Z3B0 74 aa13.58□□□□□ -0.24
CPNE1-220ENST00000458038 GATD1Q8NB37 220 aa13.58□□□□□ -0.24
CPNE1-220ENST00000458038 CHCHD10Q8WYQ3 142 aaPredicted RBP13.58□□□□□ -0.24
CPNE1-220ENST00000458038 IGKV3OR2-268A0A0C4DH90 116 aa13.57□□□□□ -0.24
CPNE1-220ENST00000458038 LINC00474Q9P2X8 69 aa13.57□□□□□ -0.24
CPNE1-220ENST00000458038 GVQW2A0A096LPI5 108 aaPredicted RBP13.56□□□□□ -0.24
CPNE1-220ENST00000458038 MAJINQ3KP22 176 aa13.56□□□□□ -0.24
CPNE1-220ENST00000458038 BCL2P10415 239 aa13.55□□□□□ -0.24
CPNE1-220ENST00000458038 ZNF25P17030 456 aaPredicted RBP13.55□□□□□ -0.24
CPNE1-220ENST00000458038 HIGD2BQ4VC39 106 aa13.55□□□□□ -0.24
CPNE1-220ENST00000458038 PRSS3P2Q8NHM4 247 aa13.55□□□□□ -0.24
CPNE1-220ENST00000458038 GTSF1Q8WW33 167 aa13.55□□□□□ -0.24
CPNE1-220ENST00000458038 RPP21Q9H633 154 aaKnown RBP13.55□□□□□ -0.24
CPNE1-220ENST00000458038 APCSP02743 223 aa13.54□□□□□ -0.24
CPNE1-220ENST00000458038 RNASEKQ6P5S7 137 aaKnown RBP13.54□□□□□ -0.24
CPNE1-220ENST00000458038 LINC01600Q96MT4 127 aa13.54□□□□□ -0.24
CPNE1-220ENST00000458038 FAM210AQ96ND0 272 aa13.54□□□□□ -0.24
CPNE1-220ENST00000458038 TRAV26-2A0A0B4J265 109 aa13.53□□□□□ -0.24
CPNE1-220ENST00000458038 IGKV2-24A0A0C4DH68 120 aa13.53□□□□□ -0.24
CPNE1-220ENST00000458038 Q6ZNX1 250 aa13.53□□□□□ -0.24
CPNE1-220ENST00000458038 STPG4Q8N801 248 aa13.53□□□□□ -0.24
CPNE1-220ENST00000458038 FGF6P10767 208 aa13.52□□□□□ -0.25
CPNE1-220ENST00000458038 PRR3P79522 188 aaKnown RBP13.52□□□□□ -0.25
CPNE1-220ENST00000458038 OR5A1Q8NGJ0 315 aa13.52□□□□□ -0.25
CPNE1-220ENST00000458038 SDHAF1A6NFY7 115 aa13.51□□□□□ -0.25
CPNE1-220ENST00000458038 RPL39LQ96EH5 51 aaKnown RBP13.51□□□□□ -0.25
CPNE1-220ENST00000458038 TMEM101Q96IK0 257 aa13.51□□□□□ -0.25
CPNE1-220ENST00000458038 BTF3L4Q96K17 158 aa13.51□□□□□ -0.25
CPNE1-220ENST00000458038 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.5□□□□□ -0.25
CPNE1-220ENST00000458038 IGKV2-29A2NJV5 120 aaPredicted RBP13.5□□□□□ -0.25
CPNE1-220ENST00000458038 FOXI1Q12951 378 aa13.5□□□□□ -0.25
CPNE1-220ENST00000458038 OCC1Q8TAD7 63 aa13.5□□□□□ -0.25
CPNE1-220ENST00000458038 RNASE7Q9H1E1 156 aaKnown RBP13.5□□□□□ -0.25
CPNE1-220ENST00000458038 I3L3M4 83 aa13.49□□□□□ -0.25
CPNE1-220ENST00000458038 IGHV1-58A0A0C4DH39 117 aa13.48□□□□□ -0.25
CPNE1-220ENST00000458038 TRBV6-5A0A0K0K1A5 114 aa13.48□□□□□ -0.25
CPNE1-220ENST00000458038 K7EN84 100 aa13.48□□□□□ -0.25
CPNE1-220ENST00000458038 PMCHP20382 165 aa13.48□□□□□ -0.25
CPNE1-220ENST00000458038 A0A096LNI7 61 aa13.47□□□□□ -0.25
CPNE1-220ENST00000458038 A8MWL6 223 aa13.47□□□□□ -0.25
CPNE1-220ENST00000458038 REG3GQ6UW15 175 aa13.47□□□□□ -0.25
CPNE1-220ENST00000458038 SPINK6Q6UWN8 80 aa13.47□□□□□ -0.25
CPNE1-220ENST00000458038 LYPD6BQ8NI32 183 aa13.47□□□□□ -0.25
CPNE1-220ENST00000458038 LINC00959A0A1B0GUT2 108 aa13.46□□□□□ -0.25
CPNE1-220ENST00000458038 XCL1P47992 114 aa13.46□□□□□ -0.25
CPNE1-220ENST00000458038 SLC51BQ86UW2 128 aa13.46□□□□□ -0.25
CPNE1-220ENST00000458038 TNXBP22105 4242 aa13.46□□□□□ -0.25
CPNE1-220ENST00000458038 FAM231BA6NCW3 169 aa13.45□□□□□ -0.26
CPNE1-220ENST00000458038 SS18Q15532 418 aa13.45□□□□□ -0.26
CPNE1-220ENST00000458038 A0A0J9YXV3 536 aa13.44□□□□□ -0.26
CPNE1-220ENST00000458038 CCL25O15444 150 aa13.44□□□□□ -0.26
CPNE1-220ENST00000458038 GATCO43716 136 aaKnown RBP13.44□□□□□ -0.26
CPNE1-220ENST00000458038 ESDP10768 282 aa13.44□□□□□ -0.26
CPNE1-220ENST00000458038 FOXA3P55318 350 aaPredicted RBP13.44□□□□□ -0.26
CPNE1-220ENST00000458038 FAM231DQ6ZW35 169 aa13.44□□□□□ -0.26
CPNE1-220ENST00000458038 CARD19Q96LW7 228 aa13.44□□□□□ -0.26
CPNE1-220ENST00000458038 TMEM250H0YL14 139 aa13.43□□□□□ -0.26
CPNE1-220ENST00000458038 MRAP2Q96G30 205 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms