RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 FAM210AQ96ND0 272 aa12.62□□□□□ -0.39
USP40-207ENST00000450940 REG3AQ06141 175 aa12.61□□□□□ -0.39
USP40-207ENST00000450940 EIF5A2Q9GZV4 153 aaKnown RBP12.61□□□□□ -0.39
USP40-207ENST00000450940 IGLV4-60A0A075B6I1 120 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 HLA-DQA1P01909 254 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 COTL1Q14019 142 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 CLPSL2Q6UWE3 100 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 TEX261Q6UWH6 196 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 SMIM15Q7Z3B0 74 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 SMIM7Q9BQ49 75 aa12.6□□□□□ -0.39
USP40-207ENST00000450940 TRAV8-4A0A0B4J246 113 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 TRAV26-2A0A0B4J265 109 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 PRSS1P07477 247 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 SRP19P09132 144 aaKnown RBP12.59□□□□□ -0.39
USP40-207ENST00000450940 CEBPGP53567 150 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 DGAT2L7PQ6IED9 249 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 SCXQ7RTU7 201 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 LINC01551Q86U37 167 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 CHAC1Q9BUX1 264 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 FLG2Q5D862 2391 aaPredicted RBP12.59□□□□□ -0.39
USP40-207ENST00000450940 MYCBP2O75592 4640 aa12.59□□□□□ -0.39
USP40-207ENST00000450940 HERC1Q15751 4861 aa12.58□□□□□ -0.4
USP40-207ENST00000450940 GFRA4Q9GZZ7 299 aa12.58□□□□□ -0.4
USP40-207ENST00000450940 FAM231BA6NCW3 169 aa12.57□□□□□ -0.4
USP40-207ENST00000450940 AMTP48728 403 aa12.57□□□□□ -0.4
USP40-207ENST00000450940 DEFB104AQ8WTQ1 72 aa12.57□□□□□ -0.4
USP40-207ENST00000450940 RPL39LQ96EH5 51 aaKnown RBP12.57□□□□□ -0.4
USP40-207ENST00000450940 OSTCQ9NRP0 149 aa12.57□□□□□ -0.4
USP40-207ENST00000450940 DMBT1Q9UGM3 2413 aaPredicted RBP12.57□□□□□ -0.4
USP40-207ENST00000450940 ZNF727A8MUV8 499 aa12.56□□□□□ -0.4
USP40-207ENST00000450940 NCR2O95944 276 aa12.56□□□□□ -0.4
USP40-207ENST00000450940 PLA2G1BP04054 148 aaKnown RBP12.56□□□□□ -0.4
USP40-207ENST00000450940 LINC00528Q8N1L1 170 aa12.56□□□□□ -0.4
USP40-207ENST00000450940 CLRN3Q8NCR9 226 aa12.56□□□□□ -0.4
USP40-207ENST00000450940 TSKUQ8WUA8 353 aa12.56□□□□□ -0.4
USP40-207ENST00000450940 IGLV10-54A0A075B6I4 117 aa12.55□□□□□ -0.4
USP40-207ENST00000450940 UBE2L6O14933 153 aa12.55□□□□□ -0.4
USP40-207ENST00000450940 C9orf163Q8N9P6 203 aa12.55□□□□□ -0.4
USP40-207ENST00000450940 TRBV6-5A0A0K0K1A5 114 aa12.54□□□□□ -0.4
USP40-207ENST00000450940 CIRBP-AS1Q8TBR5 109 aa12.54□□□□□ -0.4
USP40-207ENST00000450940 A0A1B0GUT8 65 aa12.53□□□□□ -0.4
USP40-207ENST00000450940 SDHAF1A6NFY7 115 aa12.53□□□□□ -0.4
USP40-207ENST00000450940 HIGD1CA8MV81 97 aa12.53□□□□□ -0.4
USP40-207ENST00000450940 H7C423 109 aa12.53□□□□□ -0.4
USP40-207ENST00000450940 BORCS7Q96B45 105 aa12.53□□□□□ -0.4
USP40-207ENST00000450940 TMEM191AQ9H0A3 160 aa12.53□□□□□ -0.4
USP40-207ENST00000450940 FAM74A3Q4VXF1 159 aa12.52□□□□□ -0.41
USP40-207ENST00000450940 CNBPP62633 177 aaKnown RBP12.51□□□□□ -0.41
USP40-207ENST00000450940 V9GYV3 84 aa12.51□□□□□ -0.41
USP40-207ENST00000450940 I3L3M4 83 aa12.5□□□□□ -0.41
USP40-207ENST00000450940 KRTAP10-4P60372 401 aaPredicted RBP12.5□□□□□ -0.41
USP40-207ENST00000450940 TMEM241Q24JQ0 296 aa12.5□□□□□ -0.41
USP40-207ENST00000450940 ISOC2Q96AB3 205 aa12.5□□□□□ -0.41
USP40-207ENST00000450940 RNF185Q96GF1 192 aa12.5□□□□□ -0.41
USP40-207ENST00000450940 GAS8-AS1O95177 125 aa12.49□□□□□ -0.41
USP40-207ENST00000450940 APCSP02743 223 aa12.49□□□□□ -0.41
USP40-207ENST00000450940 RAB4AP20338 218 aa12.49□□□□□ -0.41
USP40-207ENST00000450940 SDIM1Q6ZPB5 146 aa12.49□□□□□ -0.41
USP40-207ENST00000450940 C9JQL5 133 aa12.48□□□□□ -0.41
USP40-207ENST00000450940 ESDP10768 282 aa12.48□□□□□ -0.41
USP40-207ENST00000450940 RPL23P62829 140 aaKnown RBP12.48□□□□□ -0.41
USP40-207ENST00000450940 MRAP2Q96G30 205 aa12.48□□□□□ -0.41
USP40-207ENST00000450940 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.47□□□□□ -0.41
USP40-207ENST00000450940 IGKV2-29A2NJV5 120 aaPredicted RBP12.47□□□□□ -0.41
USP40-207ENST00000450940 FGF6P10767 208 aa12.47□□□□□ -0.41
USP40-207ENST00000450940 PMCHP20382 165 aa12.47□□□□□ -0.41
USP40-207ENST00000450940 POLR2KP53803 58 aaKnown RBP12.47□□□□□ -0.41
USP40-207ENST00000450940 AMMECR1LQ6DCA0 310 aa12.47□□□□□ -0.41
USP40-207ENST00000450940 NUP35Q8NFH5 326 aa12.47□□□□□ -0.41
USP40-207ENST00000450940 ST20Q9HBF5 79 aa12.47□□□□□ -0.41
USP40-207ENST00000450940 TRBV27A0A0K0K1C4 114 aa12.46□□□□□ -0.41
USP40-207ENST00000450940 hDV102S1A0JD36 115 aa12.46□□□□□ -0.41
USP40-207ENST00000450940 TSHBP01222 138 aa12.46□□□□□ -0.41
USP40-207ENST00000450940 SLPIP03973 132 aa12.46□□□□□ -0.41
USP40-207ENST00000450940 ZNF25P17030 456 aaPredicted RBP12.46□□□□□ -0.41
USP40-207ENST00000450940 RIGQ13278 110 aa12.46□□□□□ -0.41
USP40-207ENST00000450940 SMDT1Q9H4I9 107 aa12.46□□□□□ -0.41
USP40-207ENST00000450940 RPS10P46783 165 aaKnown RBP12.45□□□□□ -0.42
USP40-207ENST00000450940 RNASEKQ6P5S7 137 aaKnown RBP12.45□□□□□ -0.42
USP40-207ENST00000450940 AMN1Q8IY45 258 aa12.45□□□□□ -0.42
USP40-207ENST00000450940 NAT8Q9UHE5 227 aa12.45□□□□□ -0.42
USP40-207ENST00000450940 GAGE12HA6NDE8 117 aa12.44□□□□□ -0.42
USP40-207ENST00000450940 SRSF3P84103 164 aaKnown RBP12.44□□□□□ -0.42
USP40-207ENST00000450940 PEA15Q15121 130 aa12.44□□□□□ -0.42
USP40-207ENST00000450940 C15orf56Q8N910 161 aa12.44□□□□□ -0.42
USP40-207ENST00000450940 NAT8BQ9UHF3 227 aa12.44□□□□□ -0.42
USP40-207ENST00000450940 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.44□□□□□ -0.42
USP40-207ENST00000450940 CIRBPQ14011 172 aaKnown RBP12.43□□□□□ -0.42
USP40-207ENST00000450940 CFAP161Q6P656 301 aa12.43□□□□□ -0.42
USP40-207ENST00000450940 CHCHD10Q8WYQ3 142 aaPredicted RBP12.43□□□□□ -0.42
USP40-207ENST00000450940 AP5S1Q9NUS5 200 aa12.43□□□□□ -0.42
USP40-207ENST00000450940 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.42□□□□□ -0.42
USP40-207ENST00000450940 IGKV3OR2-268A0A0C4DH90 116 aa12.42□□□□□ -0.42
USP40-207ENST00000450940 SMIM27A0A1W2PRY6 76 aa12.42□□□□□ -0.42
USP40-207ENST00000450940 PANO1I0J062 215 aa12.42□□□□□ -0.42
USP40-207ENST00000450940 ADIRFQ15847 76 aa12.42□□□□□ -0.42
USP40-207ENST00000450940 MRPL52Q86TS9 123 aaKnown RBP12.42□□□□□ -0.42
USP40-207ENST00000450940 OR5A1Q8NGJ0 315 aa12.42□□□□□ -0.42
USP40-207ENST00000450940 TMEM242Q9NWH2 141 aa12.42□□□□□ -0.42
USP40-207ENST00000450940 KRTAP29-1A8MX34 341 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms