RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 FAM231CP0DMU5 169 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 IGHV4-30-4P0DP06 118 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 TMEM243Q9BU79 118 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 CST9LQ9H4G1 147 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 H7C423 109 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 RPL39P62891 51 aaKnown RBP4.31□□□□□ -1.72
VPS50-205ENST00000441602 SEC11AP67812 179 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 BATFQ16520 125 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 ANKRD39Q53RE8 183 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 X6R8D5 127 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 TRBV25-1A0A075B6N4 114 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 PLAC8L1A1L4L8 177 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 UBE2D3P61077 147 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 UBE2D2P62837 147 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 COL5A1-AS1Q5SY13 56 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 Q6ZSN1 163 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 LINC00612Q8N6U2 182 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 STPG4Q8N801 248 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 SLC25A29Q8N8R3 303 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 RNF183Q96D59 192 aa4.31□□□□□ -1.72
VPS50-205ENST00000441602 A8MZ25 164 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 PRO0255Q9UI72 69 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 IGHV4-28A0A0C4DH34 117 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 IGHV3-38A0A0C4DH36 116 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 ATP5G1P05496 136 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 MRPS36P82909 103 aaKnown RBP4.3□□□□□ -1.72
VPS50-205ENST00000441602 TMEM170BQ5T4T1 132 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 FAM222AQ5U5X8 452 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 SH2D6Q7Z4S9 175 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 OR5A1Q8NGJ0 315 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 PLEKHB2Q96CS7 222 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 GTSF1LQ9H1H1 148 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 IGLV4-3A0A075B6K6 122 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 C11orf86A6NJI1 115 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 H3BRM9 83 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 EGFEM1PQ0D2K5 195 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 HSD52Q0P140 79 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 BOD1L2Q8IYS8 172 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 CHAC1Q9BUX1 264 aa4.3□□□□□ -1.72
VPS50-205ENST00000441602 GEMIN7Q9H840 131 aaKnown RBP4.3□□□□□ -1.72
VPS50-205ENST00000441602 PAX4O43316 350 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 FHL2Q14192 279 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 OXLD1Q5BKU9 147 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 NFE4Q86UQ8 179 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 SPATA3Q8NHX4 192 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 CHCHD7Q9BUK0 85 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 HHLA3Q9XRX5 114 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 E9PLD3 99 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 ZNF25P17030 456 aaPredicted RBP4.29□□□□□ -1.72
VPS50-205ENST00000441602 LGALS3P17931 250 aaKnown RBP4.29□□□□□ -1.72
VPS50-205ENST00000441602 PRIMA1Q86XR5 153 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 DEFB104AQ8WTQ1 72 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 HIGD1BQ9P298 99 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 MAP1AP78559 2803 aaPredicted RBP4.29□□□□□ -1.72
VPS50-205ENST00000441602 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.29□□□□□ -1.72
VPS50-205ENST00000441602 IGKV2-29A2NJV5 120 aaPredicted RBP4.29□□□□□ -1.72
VPS50-205ENST00000441602 ATP6V0E2Q8NHE4 81 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 SNHG12Q9BXW3 62 aa4.29□□□□□ -1.72
VPS50-205ENST00000441602 TRAV8-6A0A0B4J262 113 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 A6NDN8 102 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 FGF6P10767 208 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 HINT1P49773 126 aaPredicted RBP4.28□□□□□ -1.72
VPS50-205ENST00000441602 UBE2D4Q9Y2X8 147 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 SETD2Q9BYW2 2564 aaPredicted RBP4.28□□□□□ -1.72
VPS50-205ENST00000441602 EREGO14944 169 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 GYPEP15421 78 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 TAL2Q16559 108 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 AMELXQ99217 191 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 CHCHD5Q9BSY4 110 aa4.28□□□□□ -1.72
VPS50-205ENST00000441602 CSDC2Q9Y534 153 aaKnown RBP4.28□□□□□ -1.72
VPS50-205ENST00000441602 NSD1Q96L73 2696 aaPredicted RBP4.28□□□□□ -1.72
VPS50-205ENST00000441602 MYMXA0A1B0GTQ4 84 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 TINCRA0A1B0GVN0 87 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 F5H768 121 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 TCTAP57738 103 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 SCGB1D4Q6XE38 83 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 MXRA5Q9NR99 2828 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 ZNF815PA8K554 130 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 LEPROTO15243 131 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 TIRAPP58753 221 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 HERVK_113P63121 156 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 MRPL23Q16540 153 aaKnown RBP4.27□□□□□ -1.73
VPS50-205ENST00000441602 Q6ZUT4 128 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 Q8NAQ8 132 aa4.27□□□□□ -1.73
VPS50-205ENST00000441602 IGLV4-69A0A075B6H9 119 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 TRBV6-8A0A0A6YYG3 113 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 A0A0J9YXV3 536 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 HTN3P15516 51 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 PCP2Q8IVA1 136 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 LINC00469Q8N7U9 141 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 ORAOV1Q8WV07 137 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 ICOSQ9Y6W8 199 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 ANK3Q12955 4377 aaKnown RBP4.26□□□□□ -1.73
VPS50-205ENST00000441602 HIVEP1P15822 2718 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 SETXQ7Z333 2677 aaKnown RBP4.26□□□□□ -1.73
VPS50-205ENST00000441602 TRAV26-1A0A087WT03 109 aa4.26□□□□□ -1.73
VPS50-205ENST00000441602 OPRPNQ99935 248 aaPredicted RBP4.26□□□□□ -1.73
VPS50-205ENST00000441602 ASH1LQ9NR48 2969 aaKnown RBP4.26□□□□□ -1.73
VPS50-205ENST00000441602 ZNF22P17026 224 aaPredicted RBP4.26□□□□□ -1.73
VPS50-205ENST00000441602 PTTG1IPP53801 180 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms