RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 KRTAP29-1A8MX34 341 aaPredicted RBP11.93□□□□□ -0.5
AC004540.1-201ENST00000439120 KRTAP26-1Q6PEX3 210 aa11.93□□□□□ -0.5
AC004540.1-201ENST00000439120 OCC1Q8TAD7 63 aa11.93□□□□□ -0.5
AC004540.1-201ENST00000439120 CNFNQ9BYD5 112 aa11.93□□□□□ -0.5
AC004540.1-201ENST00000439120 IGLV4-60A0A075B6I1 120 aa11.92□□□□□ -0.5
AC004540.1-201ENST00000439120 hDV102S1A0JD36 115 aa11.92□□□□□ -0.5
AC004540.1-201ENST00000439120 K7EN84 100 aa11.92□□□□□ -0.5
AC004540.1-201ENST00000439120 AKAP14Q86UN6 197 aa11.92□□□□□ -0.5
AC004540.1-201ENST00000439120 AP5S1Q9NUS5 200 aa11.92□□□□□ -0.5
AC004540.1-201ENST00000439120 BLOC1S1P78537 153 aa11.91□□□□□ -0.5
AC004540.1-201ENST00000439120 TRAV26-2A0A0B4J265 109 aa11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 GATCO43716 136 aaKnown RBP11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 CEBPGP53567 150 aa11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 RPL37AP61513 92 aaKnown RBP11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 ALKAL2Q6UX46 152 aa11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 GATD1Q8NB37 220 aa11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 GFRA4Q9GZZ7 299 aa11.9□□□□□ -0.5
AC004540.1-201ENST00000439120 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.89□□□□□ -0.51
AC004540.1-201ENST00000439120 TMEM250H0YL14 139 aa11.89□□□□□ -0.51
AC004540.1-201ENST00000439120 AMMECR1LQ6DCA0 310 aa11.89□□□□□ -0.51
AC004540.1-201ENST00000439120 IGKV3OR2-268A0A0C4DH90 116 aa11.88□□□□□ -0.51
AC004540.1-201ENST00000439120 A8MWL6 223 aa11.88□□□□□ -0.51
AC004540.1-201ENST00000439120 TEX261Q6UWH6 196 aa11.88□□□□□ -0.51
AC004540.1-201ENST00000439120 GTSF1Q8WW33 167 aa11.88□□□□□ -0.51
AC004540.1-201ENST00000439120 BORCS7Q96B45 105 aa11.88□□□□□ -0.51
AC004540.1-201ENST00000439120 APCSP02743 223 aa11.87□□□□□ -0.51
AC004540.1-201ENST00000439120 KRTAP10-4P60372 401 aaPredicted RBP11.87□□□□□ -0.51
AC004540.1-201ENST00000439120 CNBPP62633 177 aaKnown RBP11.87□□□□□ -0.51
AC004540.1-201ENST00000439120 Q6ZNX1 250 aa11.87□□□□□ -0.51
AC004540.1-201ENST00000439120 RPL39LQ96EH5 51 aaKnown RBP11.87□□□□□ -0.51
AC004540.1-201ENST00000439120 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.87□□□□□ -0.51
AC004540.1-201ENST00000439120 hCG_2014768A0A024R1R8 64 aa11.86□□□□□ -0.51
AC004540.1-201ENST00000439120 IGHV3-64A0A075B6Q5 118 aa11.86□□□□□ -0.51
AC004540.1-201ENST00000439120 NCR2O95944 276 aa11.86□□□□□ -0.51
AC004540.1-201ENST00000439120 SDIM1Q6ZPB5 146 aa11.86□□□□□ -0.51
AC004540.1-201ENST00000439120 DPH3Q96FX2 82 aa11.86□□□□□ -0.51
AC004540.1-201ENST00000439120 RNASEKQ6P5S7 137 aaKnown RBP11.85□□□□□ -0.51
AC004540.1-201ENST00000439120 CFAP161Q6P656 301 aa11.85□□□□□ -0.51
AC004540.1-201ENST00000439120 FAM231DQ6ZW35 169 aa11.85□□□□□ -0.51
AC004540.1-201ENST00000439120 GAGE12HA6NDE8 117 aa11.84□□□□□ -0.51
AC004540.1-201ENST00000439120 SDHAF1A6NFY7 115 aa11.84□□□□□ -0.51
AC004540.1-201ENST00000439120 OXTP01178 125 aa11.84□□□□□ -0.51
AC004540.1-201ENST00000439120 FOXA3P55318 350 aaPredicted RBP11.84□□□□□ -0.51
AC004540.1-201ENST00000439120 EIF5A2Q9GZV4 153 aaKnown RBP11.84□□□□□ -0.51
AC004540.1-201ENST00000439120 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.83□□□□□ -0.52
AC004540.1-201ENST00000439120 IGKV2-29A2NJV5 120 aaPredicted RBP11.83□□□□□ -0.52
AC004540.1-201ENST00000439120 H7C423 109 aa11.83□□□□□ -0.52
AC004540.1-201ENST00000439120 CT83Q5H943 113 aa11.83□□□□□ -0.52
AC004540.1-201ENST00000439120 SMIM7Q9BQ49 75 aa11.83□□□□□ -0.52
AC004540.1-201ENST00000439120 PANO1I0J062 215 aa11.82□□□□□ -0.52
AC004540.1-201ENST00000439120 PMCHP20382 165 aa11.82□□□□□ -0.52
AC004540.1-201ENST00000439120 I3L3M4 83 aa11.81□□□□□ -0.52
AC004540.1-201ENST00000439120 FGF6P10767 208 aa11.81□□□□□ -0.52
AC004540.1-201ENST00000439120 LYPD6BQ8NI32 183 aa11.81□□□□□ -0.52
AC004540.1-201ENST00000439120 CHCHD10Q8WYQ3 142 aaPredicted RBP11.81□□□□□ -0.52
AC004540.1-201ENST00000439120 TMEM101Q96IK0 257 aa11.81□□□□□ -0.52
AC004540.1-201ENST00000439120 BTF3L4Q96K17 158 aa11.81□□□□□ -0.52
AC004540.1-201ENST00000439120 ST20Q9HBF5 79 aa11.8□□□□□ -0.52
AC004540.1-201ENST00000439120 A0A1B0GUT8 65 aa11.79□□□□□ -0.52
AC004540.1-201ENST00000439120 ZNF25P17030 456 aaPredicted RBP11.79□□□□□ -0.52
AC004540.1-201ENST00000439120 HIGD2BQ4VC39 106 aa11.79□□□□□ -0.52
AC004540.1-201ENST00000439120 C15orf56Q8N910 161 aa11.79□□□□□ -0.52
AC004540.1-201ENST00000439120 RNF185Q96GF1 192 aa11.79□□□□□ -0.52
AC004540.1-201ENST00000439120 TRBV6-5A0A0K0K1A5 114 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 ZNF727A8MUV8 499 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 HIGD1CA8MV81 97 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 SLPIP03973 132 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 CIRBPQ14011 172 aaKnown RBP11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 SERTAD4-AS1Q5TG53 156 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 LINC01551Q86U37 167 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 TSKUQ8WUA8 353 aa11.78□□□□□ -0.52
AC004540.1-201ENST00000439120 CHTF8P0CG12 524 aa11.77□□□□□ -0.53
AC004540.1-201ENST00000439120 RPS10P46783 165 aaKnown RBP11.77□□□□□ -0.53
AC004540.1-201ENST00000439120 OR5A1Q8NGJ0 315 aa11.77□□□□□ -0.53
AC004540.1-201ENST00000439120 MRAP2Q96G30 205 aa11.77□□□□□ -0.53
AC004540.1-201ENST00000439120 FAM210AQ96ND0 272 aa11.77□□□□□ -0.53
AC004540.1-201ENST00000439120 A0A087WYN8 130 aa11.76□□□□□ -0.53
AC004540.1-201ENST00000439120 SPACA4Q8TDM5 124 aa11.76□□□□□ -0.53
AC004540.1-201ENST00000439120 TMEM191AQ9H0A3 160 aa11.76□□□□□ -0.53
AC004540.1-201ENST00000439120 OSTCQ9NRP0 149 aa11.76□□□□□ -0.53
AC004540.1-201ENST00000439120 TMEM242Q9NWH2 141 aa11.76□□□□□ -0.53
AC004540.1-201ENST00000439120 FAM231BA6NCW3 169 aa11.75□□□□□ -0.53
AC004540.1-201ENST00000439120 NDUFS6O75380 124 aaKnown RBP11.75□□□□□ -0.53
AC004540.1-201ENST00000439120 XCL1P47992 114 aa11.75□□□□□ -0.53
AC004540.1-201ENST00000439120 TSHBP01222 138 aa11.74□□□□□ -0.53
AC004540.1-201ENST00000439120 HNRNPA3P51991 378 aaKnown RBP11.74□□□□□ -0.53
AC004540.1-201ENST00000439120 COX6A2Q02221 97 aa11.74□□□□□ -0.53
AC004540.1-201ENST00000439120 GVQW2A0A096LPI5 108 aaPredicted RBP11.73□□□□□ -0.53
AC004540.1-201ENST00000439120 GAS8-AS1O95177 125 aa11.73□□□□□ -0.53
AC004540.1-201ENST00000439120 SRP19P09132 144 aaKnown RBP11.73□□□□□ -0.53
AC004540.1-201ENST00000439120 RIGQ13278 110 aa11.73□□□□□ -0.53
AC004540.1-201ENST00000439120 AMN1Q8IY45 258 aa11.73□□□□□ -0.53
AC004540.1-201ENST00000439120 C7orf33Q8WU49 177 aa11.73□□□□□ -0.53
AC004540.1-201ENST00000439120 IGKV2-24A0A0C4DH68 120 aa11.72□□□□□ -0.53
AC004540.1-201ENST00000439120 CCL25O15444 150 aa11.72□□□□□ -0.53
AC004540.1-201ENST00000439120 ESDP10768 282 aa11.72□□□□□ -0.53
AC004540.1-201ENST00000439120 RAB4AP20338 218 aa11.72□□□□□ -0.53
AC004540.1-201ENST00000439120 FOXI1Q12951 378 aa11.72□□□□□ -0.53
AC004540.1-201ENST00000439120 SS18Q15532 418 aa11.72□□□□□ -0.53
AC004540.1-201ENST00000439120 LRP1Q07954 4544 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms