RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GAGE5Q13069 117 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 GAGE13Q4V321 117 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 FA2HQ7L5A8 372 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 BAGE3Q86Y29 109 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 UBE2DNLQ8IWF7 75 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 TRAV26-1A0A087WT03 109 aa8.43□□□□□ -1.06
PTPRF-208ENST00000437607 A0A0J9YY99 117 aa8.43□□□□□ -1.06
PTPRF-208ENST00000437607 LOC389332A0A1B0GUA5 103 aa8.43□□□□□ -1.06
PTPRF-208ENST00000437607 SDHAF1A6NFY7 115 aa8.43□□□□□ -1.06
PTPRF-208ENST00000437607 S100A6P06703 90 aa8.43□□□□□ -1.06
PTPRF-208ENST00000437607 GYPEP15421 78 aa8.43□□□□□ -1.06
PTPRF-208ENST00000437607 RNASEKQ6P5S7 137 aaKnown RBP8.43□□□□□ -1.06
PTPRF-208ENST00000437607 NXT2Q9NPJ8 142 aaKnown RBP8.43□□□□□ -1.06
PTPRF-208ENST00000437607 TRBV7-3A0A075B6L6 115 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 LOC100131303A0A0U1RQF7 123 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 RPL32P62910 135 aaKnown RBP8.42□□□□□ -1.06
PTPRF-208ENST00000437607 Q0VG73 95 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 ZNRF2Q8NHG8 242 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 PRSS3P2Q8NHM4 247 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 KIR2DL4Q99706 377 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 TMEM70Q9BUB7 260 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 ICOSQ9Y6W8 199 aa8.42□□□□□ -1.06
PTPRF-208ENST00000437607 NEGR1Q7Z3B1 354 aa8.41□□□□□ -1.06
PTPRF-208ENST00000437607 TCAPO15273 167 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 LINC00694P0DN24 101 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 FCER1GP30273 86 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 IFI27P40305 119 aaPredicted RBP8.4□□□□□ -1.06
PTPRF-208ENST00000437607 NDUFA6P56556 154 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 UBE2D3P61077 147 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 UBE2D2P62837 147 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 COTL1Q14019 142 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 C1orf134Q5TEV5 83 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 DAZ4Q86SG3 579 aaKnown RBP8.4□□□□□ -1.06
PTPRF-208ENST00000437607 Q8N8P6 123 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 DAZ3Q9NR90 486 aaKnown RBP8.4□□□□□ -1.06
PTPRF-208ENST00000437607 AP5S1Q9NUS5 200 aa8.4□□□□□ -1.06
PTPRF-208ENST00000437607 TRBV27A0A0K0K1C4 114 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 PRSS47A8MTI9 375 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 H3BNG1 76 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 I3L3M4 83 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 VCYO14598 125 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 SERF1AO75920 110 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 POLR2KP53803 58 aaKnown RBP8.39□□□□□ -1.07
PTPRF-208ENST00000437607 MRPL23Q16540 153 aaKnown RBP8.39□□□□□ -1.07
PTPRF-208ENST00000437607 SH2D6Q7Z4S9 175 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 CHCHD1Q96BP2 118 aaKnown RBP8.39□□□□□ -1.07
PTPRF-208ENST00000437607 VSIG2Q96IQ7 327 aa8.39□□□□□ -1.07
PTPRF-208ENST00000437607 HERC1Q15751 4861 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 IGHV3-38A0A0C4DH36 116 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 HSBP1O75506 76 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 TNP2Q05952 138 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 C15orf53Q8NAA6 179 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 ATP6V0E2Q8NHE4 81 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 Q9UF83 564 aa8.38□□□□□ -1.07
PTPRF-208ENST00000437607 VPS13BQ7Z7G8 4022 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 K7EMI3 77 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 NUDT3O95989 172 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 LINC00614P0C842 121 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 ORMDL2Q53FV1 153 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 TMEM97Q5BJF2 176 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 COA6Q5JTJ3 125 aaKnown RBP8.37□□□□□ -1.07
PTPRF-208ENST00000437607 NIT1Q86X76 327 aa8.37□□□□□ -1.07
PTPRF-208ENST00000437607 A0A096LPF7 62 aa8.36□□□□□ -1.07
PTPRF-208ENST00000437607 AMTP48728 403 aa8.36□□□□□ -1.07
PTPRF-208ENST00000437607 LAGE3Q14657 143 aa8.36□□□□□ -1.07
PTPRF-208ENST00000437607 FAT1Q14517 4588 aa8.36□□□□□ -1.07
PTPRF-208ENST00000437607 CDK2AP2O75956 126 aa8.35□□□□□ -1.07
PTPRF-208ENST00000437607 TSHBP01222 138 aa8.35□□□□□ -1.07
PTPRF-208ENST00000437607 LINC00310P59036 64 aa8.35□□□□□ -1.07
PTPRF-208ENST00000437607 DEFB104AQ8WTQ1 72 aa8.35□□□□□ -1.07
PTPRF-208ENST00000437607 URB1-AS1Q96HZ7 61 aa8.35□□□□□ -1.07
PTPRF-208ENST00000437607 TRBV25-1A0A075B6N4 114 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 IGHV1-24A0A0C4DH33 117 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 NBDYA0A0U1RRE5 68 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 LINC01546A6NGU7 62 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 C16orf90A8MZG2 172 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 HBDP02042 147 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 BTF3P20290 206 aaKnown RBP8.34□□□□□ -1.07
PTPRF-208ENST00000437607 G0S2P27469 103 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 S100A2P29034 98 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 PDZD11Q5EBL8 140 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 TMEM18Q96B42 140 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 GTSF1LQ9H1H1 148 aa8.34□□□□□ -1.07
PTPRF-208ENST00000437607 ESDP10768 282 aa8.33□□□□□ -1.08
PTPRF-208ENST00000437607 PMCHL1Q16048 86 aa8.33□□□□□ -1.08
PTPRF-208ENST00000437607 MAPKAPK5-AS1Q8N8E1 139 aa8.33□□□□□ -1.08
PTPRF-208ENST00000437607 TMEM243Q9BU79 118 aa8.33□□□□□ -1.08
PTPRF-208ENST00000437607 CYSLTR1Q9Y271 337 aa8.33□□□□□ -1.08
PTPRF-208ENST00000437607 TRBV6-8A0A0A6YYG3 113 aa8.32□□□□□ -1.08
PTPRF-208ENST00000437607 LINC01549A6NIU2 74 aa8.32□□□□□ -1.08
PTPRF-208ENST00000437607 UBE2L6O14933 153 aa8.32□□□□□ -1.08
PTPRF-208ENST00000437607 SNRPEP62304 92 aaKnown RBP8.32□□□□□ -1.08
PTPRF-208ENST00000437607 C6orf223Q8N319 242 aa8.32□□□□□ -1.08
PTPRF-208ENST00000437607 NUPR1O60356 82 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 TIRAPP58753 221 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 SMAGPQ0VAQ4 97 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 C2orf66Q6UXQ4 117 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 HIST3H2BBQ8N257 126 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 FAM19A2Q8N3H0 131 aa8.31□□□□□ -1.08
PTPRF-208ENST00000437607 CHCHD5Q9BSY4 110 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms