RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 FSHBP01225 129 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 HERVK_113P61574 105 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 TRAV8-3A0A0A6YYJ7 113 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 C9JAW5 83 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 SLURP1P55000 103 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 RHOHQ15669 191 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 Q6ZSV7 163 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 MUSTN1Q8IVN3 82 aa7.18□□□□□ -1.26
SS18-203ENST00000415083 A8MWV9 139 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 M0R2P5 195 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 IGHV3-33P01772 117 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 TEN1Q86WV5 123 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.17□□□□□ -1.26
SS18-203ENST00000415083 RNF183Q96D59 192 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 CHCHD7Q9BUK0 85 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 C2CD3Q4AC94 2353 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 HTN1P15515 57 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 LGALS3P17931 250 aaKnown RBP7.17□□□□□ -1.26
SS18-203ENST00000415083 TCTEX1D4Q5JR98 221 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 PPDPFLQ8WWR9 84 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 DUX3Q96PT4 197 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 I3L3M4 83 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 PAPPA-AS1Q5QFB9 102 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 EDA2RQ9HAV5 297 aa7.17□□□□□ -1.26
SS18-203ENST00000415083 Q1RN00 199 aa7.16□□□□□ -1.26
SS18-203ENST00000415083 ATP6V0E2Q8NHE4 81 aa7.16□□□□□ -1.26
SS18-203ENST00000415083 PRO1854Q9UHT4 67 aa7.16□□□□□ -1.26
SS18-203ENST00000415083 A0A0J9YXY3 114 aa7.16□□□□□ -1.26
SS18-203ENST00000415083 NPC2P61916 151 aa7.16□□□□□ -1.26
SS18-203ENST00000415083 IGHV3-30-3P0DP02 117 aa7.15□□□□□ -1.26
SS18-203ENST00000415083 C11orf72Q8NBR9 251 aa7.15□□□□□ -1.26
SS18-203ENST00000415083 ZFYVE26Q68DK2 2539 aa7.15□□□□□ -1.26
SS18-203ENST00000415083 ABCA12Q86UK0 2595 aa7.15□□□□□ -1.26
SS18-203ENST00000415083 EPG5Q9HCE0 2579 aa7.15□□□□□ -1.26
SS18-203ENST00000415083 SNRPD3P62318 126 aaKnown RBP7.15□□□□□ -1.26
SS18-203ENST00000415083 MRPS36P82909 103 aaKnown RBP7.15□□□□□ -1.26
SS18-203ENST00000415083 USP24Q9UPU5 2620 aa7.15□□□□□ -1.26
SS18-203ENST00000415083 H3BMM0 161 aa7.15□□□□□ -1.27
SS18-203ENST00000415083 KRTAP10-9P60411 292 aa7.15□□□□□ -1.27
SS18-203ENST00000415083 TMEM89A2RUT3 159 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 SLC25A20O43772 301 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 PRSS2P07478 247 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 CD28P10747 220 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 Q6YL49 198 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 SPXQ9BT56 116 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 DEFB131AP59861 70 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 UBE2D4Q9Y2X8 147 aa7.14□□□□□ -1.27
SS18-203ENST00000415083 LINC01356Q8N9X3 169 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 NTN5Q8WTR8 489 aaPredicted RBP7.13□□□□□ -1.27
SS18-203ENST00000415083 PYGO1Q9Y3Y4 419 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.13□□□□□ -1.27
SS18-203ENST00000415083 IGKV2-29A2NJV5 120 aaPredicted RBP7.13□□□□□ -1.27
SS18-203ENST00000415083 UBE2E2Q96LR5 201 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 LINC00467Q9BRT7 94 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 VPREB3Q9UKI3 123 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 TENM4Q6N022 2769 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 TRBV20-1A0A075B6N2 111 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 LYRM7Q5U5X0 104 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 TMEM61Q8N0U2 210 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 ANAPC13Q9BS18 74 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 ERG28Q9UKR5 140 aa7.13□□□□□ -1.27
SS18-203ENST00000415083 A0A0B4J2C4 111 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 IGHV3-38A0A0C4DH36 116 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 CRLF1O75462 422 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 SS18L2Q9UHA2 77 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 LRRK2Q5S007 2527 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 TEX49A0A1B0GTD5 131 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 COX6A2Q02221 97 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 ZNF462Q96JM2 2506 aa7.12□□□□□ -1.27
SS18-203ENST00000415083 PTPN13Q12923 2485 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 TRIAP1O43715 76 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 IGHV4-31P0DP07 118 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 VCX2Q9H322 139 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 MYO9AB2RTY4 2548 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 ITPR3Q14573 2671 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 TRAV4A0A0B4J268 109 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 PRB1P04280 392 aa7.11□□□□□ -1.27
SS18-203ENST00000415083 TRGV11A0A075B6L2 103 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 NDUFA7O95182 113 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 TEX29Q8N6K0 151 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 MAP6D1Q9H9H5 199 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 B5MCH6 92 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 ZFAND6Q6FIF0 208 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 VSIG2Q96IQ7 327 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 PDZD2O15018 2839 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 SETD2Q9BYW2 2564 aaPredicted RBP7.1□□□□□ -1.27
SS18-203ENST00000415083 IGHV1-58A0A0C4DH39 117 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 Q8N2B8 174 aa7.1□□□□□ -1.27
SS18-203ENST00000415083 DAND5Q8N907 189 aa7.09□□□□□ -1.27
SS18-203ENST00000415083 LINC01600Q96MT4 127 aa7.09□□□□□ -1.27
SS18-203ENST00000415083 LINC00694P0DN24 101 aa7.09□□□□□ -1.27
SS18-203ENST00000415083 KRTAP1-3Q8IUG1 177 aa7.09□□□□□ -1.27
SS18-203ENST00000415083 TIMM21Q9BVV7 248 aa7.09□□□□□ -1.27
SS18-203ENST00000415083 BEAN1Q3B7T3 259 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 IL17DQ8TAD2 202 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 TINCRA0A1B0GVN0 87 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 BBC3Q96PG8 261 aaPredicted RBP7.08□□□□□ -1.28
SS18-203ENST00000415083 SPANXDQ9BXN6 97 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 SPANXCQ9NY87 97 aa7.08□□□□□ -1.28
SS18-203ENST00000415083 CDKN2A-AS1Q9UH64 79 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms