RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 DEFB121Q5J5C9 76 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 C10orf55Q5SWW7 151 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 IGFL4Q6B9Z1 124 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 Q6ZRP5 223 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 PDPNQ86YL7 162 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 PLEKHB2Q96CS7 222 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 ODF3Q96PU9 254 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 SLC25A2Q9BXI2 301 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 SLC25A39Q9BZJ4 359 aaPredicted RBP3.36□□□□□ -1.87
SF3B1-202ENST00000409915 SLC25A22Q9H936 323 aa3.36□□□□□ -1.87
SF3B1-202ENST00000409915 PLXNB1O43157 2135 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 TRBV7-3A0A075B6L6 115 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 A0A087WW49 117 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 TRAV41A0A0B4J266 112 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 PRAC2D3DTV9 90 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 OVOL1O14753 267 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 CSN1S1P47710 185 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 GNG5P63218 68 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 FXYD3Q14802 87 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 MRGPRG-AS1Q2M3A8 158 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 DEFB136Q30KP8 78 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 REG3GQ6UW15 175 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 C1orf158Q8N1D5 194 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 SRSF12Q8WXF0 261 aaKnown RBP3.35□□□□□ -1.87
SF3B1-202ENST00000409915 DPH3Q96FX2 82 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 IGF2BP2-AS1Q96M15 143 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 METTL26Q96S19 204 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 CHAC1Q9BUX1 264 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 NPCDR1Q9BY65 106 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 PSENENQ9NZ42 101 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 TET2Q6N021 2002 aaPredicted RBP3.35□□□□□ -1.87
SF3B1-202ENST00000409915 MEGF8Q7Z7M0 2845 aa3.35□□□□□ -1.87
SF3B1-202ENST00000409915 TRAV3A0A0B4J244 114 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 IGHV3OR16-9A0A0B4J2B5 98 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 LINC01546A6NGU7 62 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 A8MWL6 223 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 A8MWV9 139 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 E7EUB6 86 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 NDUFC2-KCTD14E9PQ53 114 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 PGLYRP1O75594 196 aaPredicted RBP3.34□□□□□ -1.87
SF3B1-202ENST00000409915 COX7CP15954 63 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 PRR3P79522 188 aaKnown RBP3.34□□□□□ -1.87
SF3B1-202ENST00000409915 VMA21Q3ZAQ7 101 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 C9orf153Q5TBE3 101 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 SDIM1Q6ZPB5 146 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 Q6ZQT7 251 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 NDUFA11Q86Y39 141 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 C15orf53Q8NAA6 179 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 KLHL30-AS1Q8NEE0 82 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 RNF5Q99942 180 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 GFRA4Q9GZZ7 299 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 JPT2Q9H910 190 aa3.34□□□□□ -1.87
SF3B1-202ENST00000409915 NHP2Q9NX24 153 aaKnown RBP3.34□□□□□ -1.87
SF3B1-202ENST00000409915 NOTCH1P46531 2555 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 TRBV25-1A0A075B6N4 114 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 IGHV1OR15-1A0A075B7D0 117 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 A0A0U1RQV1 116 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 MYMXA0A1B0GTQ4 84 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 SMIM1B2RUZ4 78 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 NPYP01303 97 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 IGKV1-39P01597 117 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 IGHV3-11P01762 117 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 SLPIP03973 132 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 IGKV1D-39P04432 117 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 P0C879 139 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 SCGB1C2P0DMR2 95 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 P0DMU3 169 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 FAM231AP0DMU4 169 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 FAM231CP0DMU5 169 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 GCHFRP30047 84 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 CXCL5P42830 114 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 UBE2D1P51668 147 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 CRIP2P52943 208 aaPredicted RBP3.33□□□□□ -1.88
SF3B1-202ENST00000409915 HIST1H4AP62805 103 aaKnown RBP3.33□□□□□ -1.88
SF3B1-202ENST00000409915 CENPWQ5EE01 88 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 PCP2Q8IVA1 136 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 C10orf126Q8N4M7 172 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 C11orf72Q8NBR9 251 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 RNF185Q96GF1 192 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 LINC00477Q96M19 166 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 EDA2RQ9HAV5 297 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 ZNF355PQ9NSJ1 428 aa3.33□□□□□ -1.88
SF3B1-202ENST00000409915 TNCP24821 2201 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 A0A096LNJ9 63 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 TRAV8-2A0A0B4J237 113 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 UBE2L5PA0A1B0GUS4 154 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 H0Y9J4 135 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 K7ERJ3 54 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 UPK2O00526 184 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 NDUFS5O43920 106 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 PRB2P02812 416 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-202ENST00000409915 TRGV3P03979 118 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 LGALS1P09382 135 aaKnown RBP3.32□□□□□ -1.88
SF3B1-202ENST00000409915 RPL27AP46776 148 aaKnown RBP3.32□□□□□ -1.88
SF3B1-202ENST00000409915 FOXA3P55318 350 aaPredicted RBP3.32□□□□□ -1.88
SF3B1-202ENST00000409915 HBBP68871 147 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 SPINK9Q5DT21 86 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 HRCT1Q6UXD1 115 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 GOLT1AQ6ZVE7 132 aa3.32□□□□□ -1.88
SF3B1-202ENST00000409915 ANKRD29Q8N6D5 301 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms