RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 A8MWL6 223 aa9.54□□□□□ -0.88
NIF3L1-205ENST00000409588 FOXA3P55318 350 aaPredicted RBP9.54□□□□□ -0.88
NIF3L1-205ENST00000409588 RBX1P62877 108 aa9.54□□□□□ -0.88
NIF3L1-205ENST00000409588 DGAT2L7PQ6IED9 249 aa9.54□□□□□ -0.88
NIF3L1-205ENST00000409588 ALKAL2Q6UX46 152 aa9.54□□□□□ -0.88
NIF3L1-205ENST00000409588 FAM210AQ96ND0 272 aa9.54□□□□□ -0.88
NIF3L1-205ENST00000409588 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.53□□□□□ -0.88
NIF3L1-205ENST00000409588 SMR3BP02814 79 aaPredicted RBP9.53□□□□□ -0.88
NIF3L1-205ENST00000409588 CT83Q5H943 113 aa9.53□□□□□ -0.88
NIF3L1-205ENST00000409588 TMEM243Q9BU79 118 aa9.53□□□□□ -0.88
NIF3L1-205ENST00000409588 RNASE7Q9H1E1 156 aaKnown RBP9.53□□□□□ -0.88
NIF3L1-205ENST00000409588 FAM30AQ9NZY2 134 aa9.53□□□□□ -0.88
NIF3L1-205ENST00000409588 K7EN84 100 aa9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 GATCO43716 136 aaKnown RBP9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 NKX2-5P52952 324 aaPredicted RBP9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 GAGE6Q13070 117 aa9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 LINC00269Q8N2A0 174 aa9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 CLRN3Q8NCR9 226 aa9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 SRRM2Q9UQ35 2752 aaKnown RBP9.52□□□□□ -0.89
NIF3L1-205ENST00000409588 FAM231BA6NCW3 169 aa9.51□□□□□ -0.89
NIF3L1-205ENST00000409588 PLA2G1BP04054 148 aaKnown RBP9.51□□□□□ -0.89
NIF3L1-205ENST00000409588 COTL1Q14019 142 aa9.51□□□□□ -0.89
NIF3L1-205ENST00000409588 EIF5A2Q9GZV4 153 aaKnown RBP9.51□□□□□ -0.89
NIF3L1-205ENST00000409588 hCG_2014768A0A024R1R8 64 aa9.5□□□□□ -0.89
NIF3L1-205ENST00000409588 UBE2L6O14933 153 aa9.5□□□□□ -0.89
NIF3L1-205ENST00000409588 NCR2O95944 276 aa9.5□□□□□ -0.89
NIF3L1-205ENST00000409588 REG3AQ06141 175 aa9.5□□□□□ -0.89
NIF3L1-205ENST00000409588 BORCS7Q96B45 105 aa9.5□□□□□ -0.89
NIF3L1-205ENST00000409588 GFRA4Q9GZZ7 299 aa9.5□□□□□ -0.89
NIF3L1-205ENST00000409588 H7C423 109 aa9.49□□□□□ -0.89
NIF3L1-205ENST00000409588 GTSF1Q8WW33 167 aa9.49□□□□□ -0.89
NIF3L1-205ENST00000409588 USP17L23D6RBM5 183 aa9.48□□□□□ -0.89
NIF3L1-205ENST00000409588 GATD1Q8NB37 220 aa9.48□□□□□ -0.89
NIF3L1-205ENST00000409588 SMIM7Q9BQ49 75 aa9.48□□□□□ -0.89
NIF3L1-205ENST00000409588 CHAC1Q9BUX1 264 aa9.48□□□□□ -0.89
NIF3L1-205ENST00000409588 FAT1Q14517 4588 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 HLA-DQA1P01909 254 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 AMTP48728 403 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 FAM74A3Q4VXF1 159 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 C20orf203Q8NBC4 194 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 TSKUQ8WUA8 353 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 OSTCQ9NRP0 149 aa9.47□□□□□ -0.89
NIF3L1-205ENST00000409588 ZNF727A8MUV8 499 aa9.46□□□□□ -0.9
NIF3L1-205ENST00000409588 CEBPGP53567 150 aa9.46□□□□□ -0.9
NIF3L1-205ENST00000409588 KRTAP26-1Q6PEX3 210 aa9.46□□□□□ -0.9
NIF3L1-205ENST00000409588 LINC01551Q86U37 167 aa9.46□□□□□ -0.9
NIF3L1-205ENST00000409588 KRTAP4-9Q9BYQ8 210 aa9.46□□□□□ -0.9
NIF3L1-205ENST00000409588 SMDT1Q9H4I9 107 aa9.46□□□□□ -0.9
NIF3L1-205ENST00000409588 A0A1B0GUT8 65 aa9.45□□□□□ -0.9
NIF3L1-205ENST00000409588 PRSS1P07477 247 aa9.45□□□□□ -0.9
NIF3L1-205ENST00000409588 C9orf163Q8N9P6 203 aa9.45□□□□□ -0.9
NIF3L1-205ENST00000409588 VPS13BQ7Z7G8 4022 aa9.45□□□□□ -0.9
NIF3L1-205ENST00000409588 TRBV6-5A0A0K0K1A5 114 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 I3L3M4 83 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 PPP1R17O96001 155 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 SRP19P09132 144 aaKnown RBP9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 HAMPP81172 84 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 CFAP161Q6P656 301 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 SCXQ7RTU7 201 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 TMEM191AQ9H0A3 160 aa9.44□□□□□ -0.9
NIF3L1-205ENST00000409588 DNAH8Q96JB1 4490 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 IGLV4-60A0A075B6I1 120 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 SDHAF1A6NFY7 115 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 HIGD1CA8MV81 97 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 ZNF25P17030 456 aaPredicted RBP9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 CNBPP62633 177 aaKnown RBP9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 TMEM241Q24JQ0 296 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 LINC01620Q4KN68 170 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 AMMECR1LQ6DCA0 310 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 DEFB104AQ8WTQ1 72 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 AP5S1Q9NUS5 200 aa9.43□□□□□ -0.9
NIF3L1-205ENST00000409588 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 TRAV26-2A0A0B4J265 109 aa9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 APCSP02743 223 aa9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 PMCHP20382 165 aa9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 CLPSL2Q6UWE3 100 aa9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 CIRBP-AS1Q8TBR5 109 aa9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 MRAP2Q96G30 205 aa9.42□□□□□ -0.9
NIF3L1-205ENST00000409588 IGLV10-54A0A075B6I4 117 aa9.41□□□□□ -0.9
NIF3L1-205ENST00000409588 RIGQ13278 110 aa9.41□□□□□ -0.9
NIF3L1-205ENST00000409588 PEA15Q15121 130 aa9.41□□□□□ -0.9
NIF3L1-205ENST00000409588 ST20Q9HBF5 79 aa9.41□□□□□ -0.9
NIF3L1-205ENST00000409588 RPL39LQ96EH5 51 aaKnown RBP9.4□□□□□ -0.9
NIF3L1-205ENST00000409588 TMEM101Q96IK0 257 aa9.4□□□□□ -0.9
NIF3L1-205ENST00000409588 BTF3L4Q96K17 158 aa9.4□□□□□ -0.9
NIF3L1-205ENST00000409588 hDV102S1A0JD36 115 aa9.39□□□□□ -0.91
NIF3L1-205ENST00000409588 RAB4AP20338 218 aa9.39□□□□□ -0.91
NIF3L1-205ENST00000409588 SMAGPQ0VAQ4 97 aa9.39□□□□□ -0.91
NIF3L1-205ENST00000409588 SDIM1Q6ZPB5 146 aa9.39□□□□□ -0.91
NIF3L1-205ENST00000409588 NAT8BQ9UHF3 227 aa9.39□□□□□ -0.91
NIF3L1-205ENST00000409588 TRBV27A0A0K0K1C4 114 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 A0A1B0GW15 77 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 VCYO14598 125 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 FGF6P10767 208 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 POLR2KP53803 58 aaKnown RBP9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 RNASEKQ6P5S7 137 aaKnown RBP9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 ISOC2Q96AB3 205 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 NAT8Q9UHE5 227 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 V9GYV3 84 aa9.38□□□□□ -0.91
NIF3L1-205ENST00000409588 DMBT1Q9UGM3 2413 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms