RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 WDR73Q6P4I2 378 aa12.56□□□□□ -0.4
SMARCB1-204ENST00000407422 SCXQ7RTU7 201 aa12.56□□□□□ -0.4
SMARCB1-204ENST00000407422 CNFNQ9BYD5 112 aa12.56□□□□□ -0.4
SMARCB1-204ENST00000407422 USP17L23D6RBM5 183 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 NIT2Q9NQR4 276 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 BLOC1S1P78537 153 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 C14orf177Q52M58 125 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 KRTAP26-1Q6PEX3 210 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 LINC00528Q8N1L1 170 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 GTSF1Q8WW33 167 aa12.55□□□□□ -0.4
SMARCB1-204ENST00000407422 LYPD6BQ8NI32 183 aa12.54□□□□□ -0.4
SMARCB1-204ENST00000407422 TRAV26-2A0A0B4J265 109 aa12.53□□□□□ -0.4
SMARCB1-204ENST00000407422 PCP4L1A6NKN8 68 aa12.53□□□□□ -0.4
SMARCB1-204ENST00000407422 TMEM250H0YL14 139 aa12.53□□□□□ -0.4
SMARCB1-204ENST00000407422 C20orf203Q8NBC4 194 aa12.53□□□□□ -0.4
SMARCB1-204ENST00000407422 TMEM243Q9BU79 118 aa12.53□□□□□ -0.4
SMARCB1-204ENST00000407422 IGLV10-54A0A075B6I4 117 aa12.52□□□□□ -0.4
SMARCB1-204ENST00000407422 PRSS1P07477 247 aa12.52□□□□□ -0.4
SMARCB1-204ENST00000407422 REG3AQ06141 175 aa12.52□□□□□ -0.4
SMARCB1-204ENST00000407422 GATD1Q8NB37 220 aa12.52□□□□□ -0.4
SMARCB1-204ENST00000407422 CHAC1Q9BUX1 264 aa12.52□□□□□ -0.4
SMARCB1-204ENST00000407422 GFRA4Q9GZZ7 299 aa12.52□□□□□ -0.4
SMARCB1-204ENST00000407422 IGLV4-60A0A075B6I1 120 aa12.51□□□□□ -0.41
SMARCB1-204ENST00000407422 CEBPGP53567 150 aa12.51□□□□□ -0.41
SMARCB1-204ENST00000407422 FOXA3P55318 350 aaPredicted RBP12.51□□□□□ -0.41
SMARCB1-204ENST00000407422 RAB14P61106 215 aa12.51□□□□□ -0.41
SMARCB1-204ENST00000407422 PGLYRP4Q96LB8 373 aa12.51□□□□□ -0.41
SMARCB1-204ENST00000407422 PLA2G1BP04054 148 aaKnown RBP12.5□□□□□ -0.41
SMARCB1-204ENST00000407422 CIRBP-AS1Q8TBR5 109 aa12.5□□□□□ -0.41
SMARCB1-204ENST00000407422 A0A1B0GUV1 79 aa12.49□□□□□ -0.41
SMARCB1-204ENST00000407422 GATCO43716 136 aaKnown RBP12.49□□□□□ -0.41
SMARCB1-204ENST00000407422 SNAPINO95295 136 aa12.49□□□□□ -0.41
SMARCB1-204ENST00000407422 COTL1Q14019 142 aa12.49□□□□□ -0.41
SMARCB1-204ENST00000407422 RPL39LQ96EH5 51 aaKnown RBP12.49□□□□□ -0.41
SMARCB1-204ENST00000407422 AMTP48728 403 aa12.48□□□□□ -0.41
SMARCB1-204ENST00000407422 FAM231DQ6ZW35 169 aa12.48□□□□□ -0.41
SMARCB1-204ENST00000407422 UBE2L6O14933 153 aa12.47□□□□□ -0.41
SMARCB1-204ENST00000407422 EIF5A2Q9GZV4 153 aaKnown RBP12.47□□□□□ -0.41
SMARCB1-204ENST00000407422 A8MWL6 223 aa12.46□□□□□ -0.41
SMARCB1-204ENST00000407422 F8W036 122 aa12.46□□□□□ -0.41
SMARCB1-204ENST00000407422 CLRN3Q8NCR9 226 aa12.46□□□□□ -0.41
SMARCB1-204ENST00000407422 TRAV8-4A0A0B4J246 113 aa12.45□□□□□ -0.42
SMARCB1-204ENST00000407422 DGAT2L7PQ6IED9 249 aa12.45□□□□□ -0.42
SMARCB1-204ENST00000407422 SMIM15Q7Z3B0 74 aa12.45□□□□□ -0.42
SMARCB1-204ENST00000407422 SMIM7Q9BQ49 75 aa12.45□□□□□ -0.42
SMARCB1-204ENST00000407422 C9orf163Q8N9P6 203 aa12.44□□□□□ -0.42
SMARCB1-204ENST00000407422 LRP1Q07954 4544 aaKnown RBP12.44□□□□□ -0.42
SMARCB1-204ENST00000407422 CT83Q5H943 113 aa12.44□□□□□ -0.42
SMARCB1-204ENST00000407422 LINC01551Q86U37 167 aa12.44□□□□□ -0.42
SMARCB1-204ENST00000407422 C12orf57Q99622 126 aa12.44□□□□□ -0.42
SMARCB1-204ENST00000407422 KRTAP10-4P60372 401 aaPredicted RBP12.43□□□□□ -0.42
SMARCB1-204ENST00000407422 GAS8-AS1O95177 125 aa12.42□□□□□ -0.42
SMARCB1-204ENST00000407422 hDV102S1A0JD36 115 aa12.41□□□□□ -0.42
SMARCB1-204ENST00000407422 SDHAF1A6NFY7 115 aa12.41□□□□□ -0.42
SMARCB1-204ENST00000407422 ZNF727A8MUV8 499 aa12.41□□□□□ -0.42
SMARCB1-204ENST00000407422 SRP19P09132 144 aaKnown RBP12.41□□□□□ -0.42
SMARCB1-204ENST00000407422 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 IGKV3OR2-268A0A0C4DH90 116 aa12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 IGKV2-29A2NJV5 120 aaPredicted RBP12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 HIGD1CA8MV81 97 aa12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 PANO1I0J062 215 aa12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 TSKUQ8WUA8 353 aa12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 NDUFS6O75380 124 aaKnown RBP12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 SDIM1Q6ZPB5 146 aa12.4□□□□□ -0.42
SMARCB1-204ENST00000407422 PKHD1L1Q86WI1 4243 aa12.4□□□□□ -0.43
SMARCB1-204ENST00000407422 NCR2O95944 276 aa12.39□□□□□ -0.43
SMARCB1-204ENST00000407422 APCSP02743 223 aa12.39□□□□□ -0.43
SMARCB1-204ENST00000407422 SLPIP03973 132 aa12.39□□□□□ -0.43
SMARCB1-204ENST00000407422 BORCS7Q96B45 105 aa12.39□□□□□ -0.43
SMARCB1-204ENST00000407422 FAT3Q8TDW7 4589 aa12.38□□□□□ -0.43
SMARCB1-204ENST00000407422 A0A1B0GUT8 65 aa12.38□□□□□ -0.43
SMARCB1-204ENST00000407422 J3QL48 77 aa12.38□□□□□ -0.43
SMARCB1-204ENST00000407422 CNBPP62633 177 aaKnown RBP12.38□□□□□ -0.43
SMARCB1-204ENST00000407422 AMMECR1LQ6DCA0 310 aa12.38□□□□□ -0.43
SMARCB1-204ENST00000407422 OSTCQ9NRP0 149 aa12.38□□□□□ -0.43
SMARCB1-204ENST00000407422 FAM231BA6NCW3 169 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 GAGE12HA6NDE8 117 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 RNASEKQ6P5S7 137 aaKnown RBP12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 TRBV6-5A0A0K0K1A5 114 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 I3L3M4 83 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 FGF6P10767 208 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 PMCHP20382 165 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 RNF185Q96GF1 192 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 TMEM191AQ9H0A3 160 aa12.37□□□□□ -0.43
SMARCB1-204ENST00000407422 RPS10P46783 165 aaKnown RBP12.36□□□□□ -0.43
SMARCB1-204ENST00000407422 C15orf56Q8N910 161 aa12.36□□□□□ -0.43
SMARCB1-204ENST00000407422 V9GYV3 84 aa12.36□□□□□ -0.43
SMARCB1-204ENST00000407422 H7C423 109 aa12.35□□□□□ -0.43
SMARCB1-204ENST00000407422 KRTAP29-1A8MX34 341 aaPredicted RBP12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 C9JQL5 133 aa12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 TSHBP01222 138 aa12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 RAB4AP20338 218 aa12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 AMN1Q8IY45 258 aa12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 CHCHD10Q8WYQ3 142 aaPredicted RBP12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 ST20Q9HBF5 79 aa12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 AP5S1Q9NUS5 200 aa12.34□□□□□ -0.43
SMARCB1-204ENST00000407422 NUP35Q8NFH5 326 aa12.33□□□□□ -0.43
SMARCB1-204ENST00000407422 ISOC2Q96AB3 205 aa12.33□□□□□ -0.43
SMARCB1-204ENST00000407422 TMEM242Q9NWH2 141 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms