RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 RPL36AP83881 106 aaKnown RBP12□□□□□ -0.49
PCDH1-203ENST00000394536 RPL36ALQ969Q0 106 aaKnown RBP12□□□□□ -0.49
PCDH1-203ENST00000394536 TMEM101Q96IK0 257 aa12□□□□□ -0.49
PCDH1-203ENST00000394536 KLLNB2CW77 178 aa12□□□□□ -0.49
PCDH1-203ENST00000394536 ZNF22P17026 224 aaPredicted RBP12□□□□□ -0.49
PCDH1-203ENST00000394536 RPL35AP18077 110 aaKnown RBP12□□□□□ -0.49
PCDH1-203ENST00000394536 CFAP126Q5VTH2 177 aa12□□□□□ -0.49
PCDH1-203ENST00000394536 C11orf68Q9H3H3 251 aaKnown RBP12□□□□□ -0.49
PCDH1-203ENST00000394536 ZNF580Q9UK33 172 aa12□□□□□ -0.49
PCDH1-203ENST00000394536 TRAV26-1A0A087WT03 109 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 H3BMM0 161 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 INSP01308 110 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 UBE2WQ96B02 151 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 TRBV27A0A0K0K1C4 114 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 RNASE1P07998 156 aaKnown RBP11.99□□□□□ -0.49
PCDH1-203ENST00000394536 DCANP1Q8TF63 244 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 CRYGDP07320 174 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 LINC01620Q4KN68 170 aa11.99□□□□□ -0.49
PCDH1-203ENST00000394536 DNAL4O96015 105 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 IGHV3-30P01768 117 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 IGHV3-30-5P0DP03 117 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 TMEM61Q8N0U2 210 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 IGLV4-3A0A075B6K6 122 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 TRBV7-9A0A0J9YWB2 115 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 K7EQG2 157 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 CLEC2BQ92478 149 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 IGLV4-69A0A075B6H9 119 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 CARD19Q96LW7 228 aa11.98□□□□□ -0.49
PCDH1-203ENST00000394536 Q9H8V8 135 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 TRGV4A0A0C4DH28 118 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 A0A0J9YXY3 114 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 TSHBP01222 138 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 ELANEP08246 267 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 GATA3P23771 443 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 Q6ZUT4 128 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 CHCHD5Q9BSY4 110 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 VPREB3Q9UKI3 123 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 SOCS3O14543 225 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 CRYBA4P53673 196 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 LINC00158P58513 81 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 ZNF575Q86XF7 245 aa11.97□□□□□ -0.49
PCDH1-203ENST00000394536 LINC01619G3V211 115 aa11.96□□□□□ -0.49
PCDH1-203ENST00000394536 DSCR9P59020 149 aa11.96□□□□□ -0.49
PCDH1-203ENST00000394536 LGALS9O00182 355 aa11.96□□□□□ -0.49
PCDH1-203ENST00000394536 SCGB1A1P11684 91 aa11.96□□□□□ -0.49
PCDH1-203ENST00000394536 C15orf53Q8NAA6 179 aa11.95□□□□□ -0.5
PCDH1-203ENST00000394536 TEX49A0A1B0GTD5 131 aa11.95□□□□□ -0.5
PCDH1-203ENST00000394536 UBE2D1P51668 147 aa11.95□□□□□ -0.5
PCDH1-203ENST00000394536 TMEM223A0PJW6 202 aa11.95□□□□□ -0.5
PCDH1-203ENST00000394536 IGHV3-33P01772 117 aa11.95□□□□□ -0.5
PCDH1-203ENST00000394536 LINC01546A6NGU7 62 aa11.94□□□□□ -0.5
PCDH1-203ENST00000394536 B5MCH6 92 aa11.94□□□□□ -0.5
PCDH1-203ENST00000394536 PRB1P04280 392 aa11.94□□□□□ -0.5
PCDH1-203ENST00000394536 NFE4Q86UQ8 179 aa11.94□□□□□ -0.5
PCDH1-203ENST00000394536 MUC4Q99102 2169 aa11.94□□□□□ -0.5
PCDH1-203ENST00000394536 CRIP2P52943 208 aaPredicted RBP11.94□□□□□ -0.5
PCDH1-203ENST00000394536 XGP55808 180 aa11.94□□□□□ -0.5
PCDH1-203ENST00000394536 CSMD1Q96PZ7 3565 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 GAGE7O76087 117 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 GAGE12FP0CL80 117 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 GAGE12GP0CL81 117 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 GAGE12IP0CL82 117 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 COPS9Q8WXC6 57 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 IGLV1-40P01703 118 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 C18orf65Q6ZTR6 163 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 CDKN2A-AS1Q9UH64 79 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 ICOSQ9Y6W8 199 aa11.93□□□□□ -0.5
PCDH1-203ENST00000394536 PSMB8P28062 276 aa11.92□□□□□ -0.5
PCDH1-203ENST00000394536 SPATA25Q9BR10 227 aa11.92□□□□□ -0.5
PCDH1-203ENST00000394536 IGHV1-58A0A0C4DH39 117 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 Q6ZSV7 163 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 ATP6V0E2Q8NHE4 81 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 KIF25-AS1Q9Y6Z4 181 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 DEFB130BP0DP73 79 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 DEFB130AP0DP74 79 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 PFN2P35080 140 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 LINC00315P59091 139 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 LINC00467Q9BRT7 94 aa11.91□□□□□ -0.5
PCDH1-203ENST00000394536 TRBV6-5A0A0K0K1A5 114 aa11.9□□□□□ -0.5
PCDH1-203ENST00000394536 NSUN5P1Q3KNT7 163 aa11.9□□□□□ -0.5
PCDH1-203ENST00000394536 RNF183Q96D59 192 aa11.9□□□□□ -0.5
PCDH1-203ENST00000394536 NOP10Q9NPE3 64 aaKnown RBP11.9□□□□□ -0.5
PCDH1-203ENST00000394536 PAX4O43316 350 aa11.9□□□□□ -0.5
PCDH1-203ENST00000394536 TRIAP1O43715 76 aa11.9□□□□□ -0.5
PCDH1-203ENST00000394536 C9orf85Q96MD7 179 aa11.9□□□□□ -0.5
PCDH1-203ENST00000394536 FLNCQ14315 2725 aa11.9□□□□□ -0.51
PCDH1-203ENST00000394536 GAGE6Q13070 117 aa11.89□□□□□ -0.51
PCDH1-203ENST00000394536 SPANXA1Q9NS26 97 aa11.89□□□□□ -0.51
PCDH1-203ENST00000394536 SS18L2Q9UHA2 77 aa11.89□□□□□ -0.51
PCDH1-203ENST00000394536 Q96MF0 132 aa11.88□□□□□ -0.51
PCDH1-203ENST00000394536 SMCPP49901 116 aaPredicted RBP11.88□□□□□ -0.51
PCDH1-203ENST00000394536 CRPP02741 224 aa11.87□□□□□ -0.51
PCDH1-203ENST00000394536 RS1O15537 224 aa11.87□□□□□ -0.51
PCDH1-203ENST00000394536 IFITM1P13164 125 aa11.87□□□□□ -0.51
PCDH1-203ENST00000394536 UBE2D3P61077 147 aa11.87□□□□□ -0.51
PCDH1-203ENST00000394536 UBE2D2P62837 147 aa11.87□□□□□ -0.51
PCDH1-203ENST00000394536 RPL32P62910 135 aaKnown RBP11.86□□□□□ -0.51
PCDH1-203ENST00000394536 Q9UF83 564 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 TRBV10-2A0A0K0K1G8 114 aa11.86□□□□□ -0.51
PCDH1-203ENST00000394536 GAGE2AQ6NT46 116 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms