RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 NAA38Q9BRA0 125 aaKnown RBP11.31□□□□□ -0.6
CCDC40-202ENST00000374876 WIPF1O43516 503 aa11.3□□□□□ -0.6
CCDC40-202ENST00000374876 INSL3P51460 131 aa11.3□□□□□ -0.6
CCDC40-202ENST00000374876 RHOHQ15669 191 aa11.3□□□□□ -0.6
CCDC40-202ENST00000374876 CD300EQ496F6 205 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-202ENST00000374876 KPRPQ5T749 579 aaPredicted RBP11.3□□□□□ -0.6
CCDC40-202ENST00000374876 HIST1H4GQ99525 98 aa11.3□□□□□ -0.6
CCDC40-202ENST00000374876 PRADC1Q9BSG0 188 aa11.3□□□□□ -0.6
CCDC40-202ENST00000374876 CST9LQ9H4G1 147 aa11.3□□□□□ -0.6
CCDC40-202ENST00000374876 IGLV4-69A0A075B6H9 119 aa11.29□□□□□ -0.6
CCDC40-202ENST00000374876 C11orf86A6NJI1 115 aa11.29□□□□□ -0.6
CCDC40-202ENST00000374876 I3L3M4 83 aa11.29□□□□□ -0.6
CCDC40-202ENST00000374876 EGFEM1PQ0D2K5 195 aa11.29□□□□□ -0.6
CCDC40-202ENST00000374876 NHP2Q9NX24 153 aaKnown RBP11.29□□□□□ -0.6
CCDC40-202ENST00000374876 A0A1W2PPM0 123 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 IGLV1-51P01701 117 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 EMP1P54849 157 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 ZNF415Q09FC8 603 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 SPAG8Q99932 426 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-202ENST00000374876 IGHV3-73A0A0B4J1V6 119 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 K7ERJ3 54 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 M0R2P5 195 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 HERVK_113P61574 105 aa11.28□□□□□ -0.6
CCDC40-202ENST00000374876 GAGE12BA1L429 117 aa11.27□□□□□ -0.61
CCDC40-202ENST00000374876 K7EP34 96 aa11.27□□□□□ -0.61
CCDC40-202ENST00000374876 PRM2P04554 102 aa11.27□□□□□ -0.61
CCDC40-202ENST00000374876 RNASE8Q8TDE3 154 aaKnown RBP11.27□□□□□ -0.61
CCDC40-202ENST00000374876 LINC01587Q99440 93 aa11.27□□□□□ -0.61
CCDC40-202ENST00000374876 ZNF815PA8K554 130 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 A8MWV9 139 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 INSP01308 110 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 FABP2P12104 132 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 UFSP1Q6NVU6 142 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 C20orf203Q8NBC4 194 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 EDA2RQ9HAV5 297 aa11.26□□□□□ -0.61
CCDC40-202ENST00000374876 MEGF8Q7Z7M0 2845 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 P0DMU3 169 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 FAM231AP0DMU4 169 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 FAM231CP0DMU5 169 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 TRBV7-3A0A075B6L6 115 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 TRAV25A0A0B4J276 109 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 PIK3CD-AS1Q5SR53 167 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 TMEM170BQ5T4T1 132 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 SCGB1D4Q6XE38 83 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 PHLDA1Q8WV24 401 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-202ENST00000374876 SPCS1Q9Y6A9 102 aa11.25□□□□□ -0.61
CCDC40-202ENST00000374876 LINC00467Q9BRT7 94 aa11.24□□□□□ -0.61
CCDC40-202ENST00000374876 TNFRSF18Q9Y5U5 241 aa11.24□□□□□ -0.61
CCDC40-202ENST00000374876 ZNRF2Q8NHG8 242 aa11.23□□□□□ -0.61
CCDC40-202ENST00000374876 PTH2Q96A98 100 aa11.23□□□□□ -0.61
CCDC40-202ENST00000374876 OPRPNQ99935 248 aaPredicted RBP11.23□□□□□ -0.61
CCDC40-202ENST00000374876 DNAH3Q8TD57 4116 aa11.23□□□□□ -0.61
CCDC40-202ENST00000374876 C12orf74Q32Q52 190 aa11.23□□□□□ -0.61
CCDC40-202ENST00000374876 ODF3L2Q3SX64 289 aa11.23□□□□□ -0.61
CCDC40-202ENST00000374876 CFAP126Q5VTH2 177 aa11.22□□□□□ -0.61
CCDC40-202ENST00000374876 STHQ8IWL8 128 aa11.22□□□□□ -0.61
CCDC40-202ENST00000374876 OR5A1Q8NGJ0 315 aa11.22□□□□□ -0.61
CCDC40-202ENST00000374876 CLUHP3Q96NS8 147 aa11.22□□□□□ -0.61
CCDC40-202ENST00000374876 SPXQ9BT56 116 aa11.22□□□□□ -0.61
CCDC40-202ENST00000374876 K7EIL1 84 aa11.21□□□□□ -0.61
CCDC40-202ENST00000374876 C11orf72Q8NBR9 251 aa11.21□□□□□ -0.61
CCDC40-202ENST00000374876 XCL2Q9UBD3 114 aa11.21□□□□□ -0.61
CCDC40-202ENST00000374876 CBY1Q9Y3M2 126 aa11.21□□□□□ -0.61
CCDC40-202ENST00000374876 RHODO00212 210 aa11.21□□□□□ -0.62
CCDC40-202ENST00000374876 NFE4Q86UQ8 179 aa11.21□□□□□ -0.62
CCDC40-202ENST00000374876 PLEKHB2Q96CS7 222 aa11.21□□□□□ -0.62
CCDC40-202ENST00000374876 VCX2Q9H322 139 aa11.21□□□□□ -0.62
CCDC40-202ENST00000374876 OCIAD2Q56VL3 154 aa11.2□□□□□ -0.62
CCDC40-202ENST00000374876 DEFB121Q5J5C9 76 aa11.2□□□□□ -0.62
CCDC40-202ENST00000374876 MRPL16Q9NX20 251 aaKnown RBP11.2□□□□□ -0.62
CCDC40-202ENST00000374876 IGLV4-3A0A075B6K6 122 aa11.19□□□□□ -0.62
CCDC40-202ENST00000374876 SRSF9Q13242 221 aaKnown RBP eCLIP11.19□□□□□ -0.62
CCDC40-202ENST00000374876 Q6ZSN1 163 aa11.19□□□□□ -0.62
CCDC40-202ENST00000374876 IGLL5B9A064 214 aa11.19□□□□□ -0.62
CCDC40-202ENST00000374876 MRAPQ8TCY5 172 aa11.19□□□□□ -0.62
CCDC40-202ENST00000374876 RBX1P62877 108 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 IGHV3OR16-12A0A075B7B8 117 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 TMEM238LA0A1B0GVL6 79 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 A6NJY4 79 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 TSPEAR-AS2P59090 65 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 ZNF479Q96JC4 524 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 PYGO1Q9Y3Y4 419 aa11.18□□□□□ -0.62
CCDC40-202ENST00000374876 A0A1B0GWB2 263 aa11.17□□□□□ -0.62
CCDC40-202ENST00000374876 J3QQQ9 107 aa11.17□□□□□ -0.62
CCDC40-202ENST00000374876 LGALS3P17931 250 aaKnown RBP11.17□□□□□ -0.62
CCDC40-202ENST00000374876 Q9UF83 564 aa11.17□□□□□ -0.62
CCDC40-202ENST00000374876 A0A0J9YY99 117 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 IGHV3-53P01767 116 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 AZU1P20160 251 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 RNF151Q2KHN1 245 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 DNAJC30Q96LL9 226 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 A0A0J9YXV3 536 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 TMEM223A0PJW6 202 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 RS1O15537 224 aa11.16□□□□□ -0.62
CCDC40-202ENST00000374876 K7ERU9 68 aa11.15□□□□□ -0.62
CCDC40-202ENST00000374876 ZNF22P17026 224 aaPredicted RBP11.15□□□□□ -0.62
CCDC40-202ENST00000374876 RRN3P1Q2M238 152 aa11.15□□□□□ -0.62
CCDC40-202ENST00000374876 C1orf158Q8N1D5 194 aa11.15□□□□□ -0.62
CCDC40-202ENST00000374876 LEPROTO15243 131 aa11.14□□□□□ -0.63
CCDC40-202ENST00000374876 WFDC10AQ9H1F0 79 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms