RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TRAV26-2A0A0B4J265 109 aa14.09□□□□□ -0.15
CCDC28B-201ENST00000373602 NDUFS6O75380 124 aaKnown RBP14.09□□□□□ -0.15
CCDC28B-201ENST00000373602 PLA2G1BP04054 148 aaKnown RBP14.09□□□□□ -0.15
CCDC28B-201ENST00000373602 PRSS1P07477 247 aa14.09□□□□□ -0.15
CCDC28B-201ENST00000373602 A8MWL6 223 aa14.08□□□□□ -0.16
CCDC28B-201ENST00000373602 AMTP48728 403 aa14.08□□□□□ -0.16
CCDC28B-201ENST00000373602 CEBPGP53567 150 aa14.08□□□□□ -0.16
CCDC28B-201ENST00000373602 CT83Q5H943 113 aa14.08□□□□□ -0.16
CCDC28B-201ENST00000373602 SMIM15Q7Z3B0 74 aa14.08□□□□□ -0.16
CCDC28B-201ENST00000373602 SRRM2Q9UQ35 2752 aaKnown RBP14.07□□□□□ -0.16
CCDC28B-201ENST00000373602 IGLV10-54A0A075B6I4 117 aa14.07□□□□□ -0.16
CCDC28B-201ENST00000373602 TRAV8-4A0A0B4J246 113 aa14.07□□□□□ -0.16
CCDC28B-201ENST00000373602 FOXA3P55318 350 aaPredicted RBP14.07□□□□□ -0.16
CCDC28B-201ENST00000373602 EIF5A2Q9GZV4 153 aaKnown RBP14.07□□□□□ -0.16
CCDC28B-201ENST00000373602 GFRA4Q9GZZ7 299 aa14.07□□□□□ -0.16
CCDC28B-201ENST00000373602 UBE2L6O14933 153 aa14.06□□□□□ -0.16
CCDC28B-201ENST00000373602 DGAT2L7PQ6IED9 249 aa14.06□□□□□ -0.16
CCDC28B-201ENST00000373602 CIRBP-AS1Q8TBR5 109 aa14.06□□□□□ -0.16
CCDC28B-201ENST00000373602 RPL39LQ96EH5 51 aaKnown RBP14.06□□□□□ -0.16
CCDC28B-201ENST00000373602 FAM210AQ96ND0 272 aa14.06□□□□□ -0.16
CCDC28B-201ENST00000373602 SMIM7Q9BQ49 75 aa14.06□□□□□ -0.16
CCDC28B-201ENST00000373602 TEX261Q6UWH6 196 aa14.05□□□□□ -0.16
CCDC28B-201ENST00000373602 LINC01551Q86U37 167 aa14.04□□□□□ -0.16
CCDC28B-201ENST00000373602 C9orf163Q8N9P6 203 aa14.04□□□□□ -0.16
CCDC28B-201ENST00000373602 CLRN3Q8NCR9 226 aa14.04□□□□□ -0.16
CCDC28B-201ENST00000373602 DMBT1Q9UGM3 2413 aaPredicted RBP14.04□□□□□ -0.16
CCDC28B-201ENST00000373602 SRP19P09132 144 aaKnown RBP14.03□□□□□ -0.16
CCDC28B-201ENST00000373602 A0A1B0GVG6 124 aa14.02□□□□□ -0.17
CCDC28B-201ENST00000373602 ZNF727A8MUV8 499 aa14.02□□□□□ -0.17
CCDC28B-201ENST00000373602 NCR2O95944 276 aa14.02□□□□□ -0.17
CCDC28B-201ENST00000373602 TSKUQ8WUA8 353 aa14.02□□□□□ -0.17
CCDC28B-201ENST00000373602 MYCBP2O75592 4640 aa14.01□□□□□ -0.17
CCDC28B-201ENST00000373602 SDHAF1A6NFY7 115 aa14.01□□□□□ -0.17
CCDC28B-201ENST00000373602 BORCS7Q96B45 105 aa14.01□□□□□ -0.17
CCDC28B-201ENST00000373602 OSTCQ9NRP0 149 aa14.01□□□□□ -0.17
CCDC28B-201ENST00000373602 TRBV6-5A0A0K0K1A5 114 aa13.99□□□□□ -0.17
CCDC28B-201ENST00000373602 A0A1B0GUT8 65 aa13.99□□□□□ -0.17
CCDC28B-201ENST00000373602 FAM231BA6NCW3 169 aa13.99□□□□□ -0.17
CCDC28B-201ENST00000373602 HIGD1CA8MV81 97 aa13.99□□□□□ -0.17
CCDC28B-201ENST00000373602 H7C423 109 aa13.98□□□□□ -0.17
CCDC28B-201ENST00000373602 APCSP02743 223 aa13.98□□□□□ -0.17
CCDC28B-201ENST00000373602 CNBPP62633 177 aaKnown RBP13.98□□□□□ -0.17
CCDC28B-201ENST00000373602 TMEM191AQ9H0A3 160 aa13.98□□□□□ -0.17
CCDC28B-201ENST00000373602 HERC1Q15751 4861 aa13.98□□□□□ -0.17
CCDC28B-201ENST00000373602 hDV102S1A0JD36 115 aa13.97□□□□□ -0.17
CCDC28B-201ENST00000373602 KRTAP10-4P60372 401 aaPredicted RBP13.97□□□□□ -0.17
CCDC28B-201ENST00000373602 AMMECR1LQ6DCA0 310 aa13.97□□□□□ -0.17
CCDC28B-201ENST00000373602 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.96□□□□□ -0.17
CCDC28B-201ENST00000373602 IGKV2-29A2NJV5 120 aaPredicted RBP13.96□□□□□ -0.17
CCDC28B-201ENST00000373602 I3L3M4 83 aa13.96□□□□□ -0.17
CCDC28B-201ENST00000373602 GAS8-AS1O95177 125 aa13.96□□□□□ -0.17
CCDC28B-201ENST00000373602 SDIM1Q6ZPB5 146 aa13.96□□□□□ -0.17
CCDC28B-201ENST00000373602 FGF6P10767 208 aa13.95□□□□□ -0.18
CCDC28B-201ENST00000373602 PMCHP20382 165 aa13.95□□□□□ -0.18
CCDC28B-201ENST00000373602 RNF185Q96GF1 192 aa13.95□□□□□ -0.18
CCDC28B-201ENST00000373602 V9GYV3 84 aa13.95□□□□□ -0.18
CCDC28B-201ENST00000373602 IGKV3OR2-268A0A0C4DH90 116 aa13.94□□□□□ -0.18
CCDC28B-201ENST00000373602 RNASEKQ6P5S7 137 aaKnown RBP13.94□□□□□ -0.18
CCDC28B-201ENST00000373602 ST20Q9HBF5 79 aa13.94□□□□□ -0.18
CCDC28B-201ENST00000373602 AP5S1Q9NUS5 200 aa13.94□□□□□ -0.18
CCDC28B-201ENST00000373602 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.94□□□□□ -0.18
CCDC28B-201ENST00000373602 GAGE12HA6NDE8 117 aa13.93□□□□□ -0.18
CCDC28B-201ENST00000373602 SLPIP03973 132 aa13.93□□□□□ -0.18
CCDC28B-201ENST00000373602 RAB4AP20338 218 aa13.93□□□□□ -0.18
CCDC28B-201ENST00000373602 TMEM241Q24JQ0 296 aa13.93□□□□□ -0.18
CCDC28B-201ENST00000373602 FAM74A3Q4VXF1 159 aa13.93□□□□□ -0.18
CCDC28B-201ENST00000373602 ISOC2Q96AB3 205 aa13.93□□□□□ -0.18
CCDC28B-201ENST00000373602 PANO1I0J062 215 aa13.92□□□□□ -0.18
CCDC28B-201ENST00000373602 ESDP10768 282 aa13.92□□□□□ -0.18
CCDC28B-201ENST00000373602 ZNF25P17030 456 aaPredicted RBP13.92□□□□□ -0.18
CCDC28B-201ENST00000373602 MRAP2Q96G30 205 aa13.92□□□□□ -0.18
CCDC28B-201ENST00000373602 KRTAP29-1A8MX34 341 aaPredicted RBP13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 J3QL48 77 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 TSHBP01222 138 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 RPS10P46783 165 aaKnown RBP13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 POLR2KP53803 58 aaKnown RBP13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 RPL23P62829 140 aaKnown RBP13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 RIGQ13278 110 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 CFAP161Q6P656 301 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 AMN1Q8IY45 258 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 C15orf56Q8N910 161 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 NUP35Q8NFH5 326 aa13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 CHCHD10Q8WYQ3 142 aaPredicted RBP13.91□□□□□ -0.18
CCDC28B-201ENST00000373602 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.9□□□□□ -0.18
CCDC28B-201ENST00000373602 C9JQL5 133 aa13.9□□□□□ -0.18
CCDC28B-201ENST00000373602 TMEM242Q9NWH2 141 aa13.9□□□□□ -0.18
CCDC28B-201ENST00000373602 CIRBPQ14011 172 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-201ENST00000373602 IGHV3-64A0A075B6Q5 118 aa13.88□□□□□ -0.19
CCDC28B-201ENST00000373602 TRBV27A0A0K0K1C4 114 aa13.88□□□□□ -0.19
CCDC28B-201ENST00000373602 OR5A1Q8NGJ0 315 aa13.88□□□□□ -0.19
CCDC28B-201ENST00000373602 BTF3L4Q96K17 158 aa13.88□□□□□ -0.19
CCDC28B-201ENST00000373602 NAT8Q9UHE5 227 aa13.88□□□□□ -0.19
CCDC28B-201ENST00000373602 NAT8BQ9UHF3 227 aa13.88□□□□□ -0.19
CCDC28B-201ENST00000373602 ADIRFQ15847 76 aa13.87□□□□□ -0.19
CCDC28B-201ENST00000373602 TMEM101Q96IK0 257 aa13.87□□□□□ -0.19
CCDC28B-201ENST00000373602 RPL37AP61513 92 aaKnown RBP13.86□□□□□ -0.19
CCDC28B-201ENST00000373602 SRSF3P84103 164 aaKnown RBP13.86□□□□□ -0.19
CCDC28B-201ENST00000373602 PEA15Q15121 130 aa13.86□□□□□ -0.19
CCDC28B-201ENST00000373602 SMDT1Q9H4I9 107 aa13.86□□□□□ -0.19
CCDC28B-201ENST00000373602 SMKR1H3BMG3 65 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms