RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 XCL2Q9UBD3 114 aa12.73□□□□□ -0.37
COL9A1-201ENST00000320755 IGHV3-30P01768 117 aa12.72□□□□□ -0.37
COL9A1-201ENST00000320755 IGHV3-30-5P0DP03 117 aa12.72□□□□□ -0.37
COL9A1-201ENST00000320755 NDUFA11Q86Y39 141 aa12.72□□□□□ -0.37
COL9A1-201ENST00000320755 PEMTQ9UBM1 199 aa12.72□□□□□ -0.37
COL9A1-201ENST00000320755 RHODO00212 210 aa12.72□□□□□ -0.37
COL9A1-201ENST00000320755 AMELXQ99217 191 aa12.72□□□□□ -0.37
COL9A1-201ENST00000320755 TMEM223A0PJW6 202 aa12.71□□□□□ -0.37
COL9A1-201ENST00000320755 CFC1BP0CG36 223 aa12.71□□□□□ -0.37
COL9A1-201ENST00000320755 CFC1P0CG37 223 aa12.71□□□□□ -0.37
COL9A1-201ENST00000320755 RAX2Q96IS3 184 aa12.71□□□□□ -0.37
COL9A1-201ENST00000320755 MAP6D1Q9H9H5 199 aa12.71□□□□□ -0.37
COL9A1-201ENST00000320755 M0R2P5 195 aa12.71□□□□□ -0.38
COL9A1-201ENST00000320755 NFE4Q86UQ8 179 aa12.71□□□□□ -0.38
COL9A1-201ENST00000320755 RNF152Q8N8N0 203 aa12.71□□□□□ -0.38
COL9A1-201ENST00000320755 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.7□□□□□ -0.38
COL9A1-201ENST00000320755 IGKV2-29A2NJV5 120 aaPredicted RBP12.7□□□□□ -0.38
COL9A1-201ENST00000320755 GTSF1LQ9H1H1 148 aa12.7□□□□□ -0.38
COL9A1-201ENST00000320755 TSSC4Q9Y5U2 329 aaPredicted RBP12.7□□□□□ -0.38
COL9A1-201ENST00000320755 TRAV8-3A0A0A6YYJ7 113 aa12.7□□□□□ -0.38
COL9A1-201ENST00000320755 SCGB1C2P0DMR2 95 aa12.7□□□□□ -0.38
COL9A1-201ENST00000320755 ZNF843Q8N446 348 aa12.7□□□□□ -0.38
COL9A1-201ENST00000320755 PRO0461Q9UI25 63 aa12.7□□□□□ -0.38
COL9A1-201ENST00000320755 LEPROTO15243 131 aa12.69□□□□□ -0.38
COL9A1-201ENST00000320755 NBPF19A0A087WUL8 3843 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 A4D1N5 150 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 ZNF415Q09FC8 603 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 PTH2Q96A98 100 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 A8MWV9 139 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 A8MZ25 164 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 DEFB114Q30KQ6 69 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 CFAP126Q5VTH2 177 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 C4orf3Q8WVX3 66 aa12.68□□□□□ -0.38
COL9A1-201ENST00000320755 PRSS2P07478 247 aa12.67□□□□□ -0.38
COL9A1-201ENST00000320755 AZU1P20160 251 aa12.67□□□□□ -0.38
COL9A1-201ENST00000320755 J3QR89 54 aa12.66□□□□□ -0.38
COL9A1-201ENST00000320755 MUSTN1Q8IVN3 82 aa12.66□□□□□ -0.38
COL9A1-201ENST00000320755 HIST2H2BCQ6DN03 193 aa12.66□□□□□ -0.38
COL9A1-201ENST00000320755 C10orf126Q8N4M7 172 aa12.66□□□□□ -0.38
COL9A1-201ENST00000320755 FAM104AQ969W3 186 aa12.66□□□□□ -0.38
COL9A1-201ENST00000320755 IGHV3-30-3P0DP02 117 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 TIMM21Q9BVV7 248 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 PRO1854Q9UHT4 67 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 SMCPP49901 116 aaPredicted RBP12.65□□□□□ -0.38
COL9A1-201ENST00000320755 NPC2P61916 151 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 TCL1BO95988 128 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 SMAGPQ0VAQ4 97 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 Q6ZSV7 163 aa12.65□□□□□ -0.38
COL9A1-201ENST00000320755 SETXQ7Z333 2677 aaKnown RBP12.65□□□□□ -0.38
COL9A1-201ENST00000320755 IGHV3-53P01767 116 aa12.64□□□□□ -0.39
COL9A1-201ENST00000320755 SPINK8P0C7L1 97 aa12.64□□□□□ -0.39
COL9A1-201ENST00000320755 Q8N2B8 174 aa12.64□□□□□ -0.39
COL9A1-201ENST00000320755 WFDC11Q8NEX6 87 aa12.64□□□□□ -0.39
COL9A1-201ENST00000320755 LINC00467Q9BRT7 94 aa12.64□□□□□ -0.39
COL9A1-201ENST00000320755 GAGE12HA6NDE8 117 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 INSP01308 110 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 Q1RN00 199 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 C11orf72Q8NBR9 251 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 UBE2D3P61077 147 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 UBE2D2P62837 147 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 Q6ZUT4 128 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 CHCHD7Q9BUK0 85 aa12.63□□□□□ -0.39
COL9A1-201ENST00000320755 A0A0J9YXY3 114 aa12.62□□□□□ -0.39
COL9A1-201ENST00000320755 STHQ8IWL8 128 aa12.62□□□□□ -0.39
COL9A1-201ENST00000320755 TRGV1A0A0A0MS02 117 aa12.62□□□□□ -0.39
COL9A1-201ENST00000320755 ODF3L2Q3SX64 289 aa12.62□□□□□ -0.39
COL9A1-201ENST00000320755 EIF4EBP3O60516 100 aaPredicted RBP12.61□□□□□ -0.39
COL9A1-201ENST00000320755 PYGO1Q9Y3Y4 419 aa12.61□□□□□ -0.39
COL9A1-201ENST00000320755 DGAT2L7PQ6IED9 249 aa12.61□□□□□ -0.39
COL9A1-201ENST00000320755 SIGMAR1Q99720 223 aa12.61□□□□□ -0.39
COL9A1-201ENST00000320755 ITPR2Q14571 2701 aa12.61□□□□□ -0.39
COL9A1-201ENST00000320755 UBE2D4Q9Y2X8 147 aa12.6□□□□□ -0.39
COL9A1-201ENST00000320755 A8MTW9 85 aa12.6□□□□□ -0.39
COL9A1-201ENST00000320755 GEMIN7Q9H840 131 aaKnown RBP12.6□□□□□ -0.39
COL9A1-201ENST00000320755 FN1P02751 2386 aaKnown RBP12.6□□□□□ -0.39
COL9A1-201ENST00000320755 DNAJC9-AS1A6NH13 148 aa12.6□□□□□ -0.39
COL9A1-201ENST00000320755 TMEM238C9JI98 176 aa12.6□□□□□ -0.39
COL9A1-201ENST00000320755 MRPS36P82909 103 aaKnown RBP12.6□□□□□ -0.39
COL9A1-201ENST00000320755 NDUFA12Q9UI09 145 aa12.6□□□□□ -0.39
COL9A1-201ENST00000320755 LYRM7Q5U5X0 104 aa12.59□□□□□ -0.39
COL9A1-201ENST00000320755 ERG28Q9UKR5 140 aa12.59□□□□□ -0.39
COL9A1-201ENST00000320755 AKAP9Q99996 3911 aa12.59□□□□□ -0.39
COL9A1-201ENST00000320755 FOXI1Q12951 378 aa12.58□□□□□ -0.39
COL9A1-201ENST00000320755 KRTAP1-3Q8IUG1 177 aa12.58□□□□□ -0.39
COL9A1-201ENST00000320755 ADAMTSL4-AS1Q5T5F5 129 aa12.58□□□□□ -0.4
COL9A1-201ENST00000320755 NOTCH2Q04721 2471 aa12.58□□□□□ -0.4
COL9A1-201ENST00000320755 CCL24O00175 119 aa12.58□□□□□ -0.4
COL9A1-201ENST00000320755 C1QTNF4Q9BXJ3 329 aa12.58□□□□□ -0.4
COL9A1-201ENST00000320755 IGHV3-33P01772 117 aa12.57□□□□□ -0.4
COL9A1-201ENST00000320755 C1orf158Q8N1D5 194 aa12.57□□□□□ -0.4
COL9A1-201ENST00000320755 IGHV1-58A0A0C4DH39 117 aa12.57□□□□□ -0.4
COL9A1-201ENST00000320755 DAND5Q8N907 189 aa12.57□□□□□ -0.4
COL9A1-201ENST00000320755 TMEM263Q8WUH6 116 aaKnown RBP12.57□□□□□ -0.4
COL9A1-201ENST00000320755 ESM1Q9NQ30 184 aa12.57□□□□□ -0.4
COL9A1-201ENST00000320755 TENM4Q6N022 2769 aa12.57□□□□□ -0.4
COL9A1-201ENST00000320755 CITED2Q99967 270 aaPredicted RBP12.56□□□□□ -0.4
COL9A1-201ENST00000320755 EDA2RQ9HAV5 297 aa12.56□□□□□ -0.4
COL9A1-201ENST00000320755 CDKN2A-AS1Q9UH64 79 aa12.56□□□□□ -0.4
COL9A1-201ENST00000320755 Q6ZTI0 123 aa12.56□□□□□ -0.4
COL9A1-201ENST00000320755 SPANXA1Q9NS26 97 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms