RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 TRBV25-1A0A075B6N4 114 aa13.92□□□□□ -0.18
HOXC4-201ENST00000303406 K7EQD1 137 aa13.92□□□□□ -0.18
HOXC4-201ENST00000303406 ZNF25P17030 456 aaPredicted RBP13.92□□□□□ -0.18
HOXC4-201ENST00000303406 COTL1Q14019 142 aa13.92□□□□□ -0.18
HOXC4-201ENST00000303406 LINC00469Q8N7U9 141 aa13.92□□□□□ -0.18
HOXC4-201ENST00000303406 DEFB104AQ8WTQ1 72 aa13.92□□□□□ -0.18
HOXC4-201ENST00000303406 NOP10Q9NPE3 64 aaKnown RBP13.92□□□□□ -0.18
HOXC4-201ENST00000303406 TAL2Q16559 108 aa13.91□□□□□ -0.18
HOXC4-201ENST00000303406 ZNF479Q96JC4 524 aa13.91□□□□□ -0.18
HOXC4-201ENST00000303406 AMELXQ99217 191 aa13.91□□□□□ -0.18
HOXC4-201ENST00000303406 FN1P02751 2386 aaKnown RBP13.9□□□□□ -0.18
HOXC4-201ENST00000303406 CHAC1Q9BUX1 264 aa13.9□□□□□ -0.18
HOXC4-201ENST00000303406 NSD1Q96L73 2696 aaPredicted RBP13.9□□□□□ -0.18
HOXC4-201ENST00000303406 TRBV7-3A0A075B6L6 115 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 TRAV8-6A0A0B4J262 113 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 A6NDN8 102 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 RPL36AP83881 106 aaKnown RBP13.9□□□□□ -0.19
HOXC4-201ENST00000303406 MAPKAPK5-AS1Q8N8E1 139 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 RPL36ALQ969Q0 106 aaKnown RBP13.9□□□□□ -0.19
HOXC4-201ENST00000303406 PRADC1Q9BSG0 188 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 VCX2Q9H322 139 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 Q9UF83 564 aa13.9□□□□□ -0.19
HOXC4-201ENST00000303406 MYMXA0A1B0GTQ4 84 aa13.89□□□□□ -0.19
HOXC4-201ENST00000303406 TAX1BP3O14907 124 aa13.89□□□□□ -0.19
HOXC4-201ENST00000303406 DAZ4Q86SG3 579 aaKnown RBP13.89□□□□□ -0.19
HOXC4-201ENST00000303406 WFDC9Q8NEX5 89 aa13.89□□□□□ -0.19
HOXC4-201ENST00000303406 TIMM21Q9BVV7 248 aa13.89□□□□□ -0.19
HOXC4-201ENST00000303406 TTTY13Q9BZ97 58 aa13.89□□□□□ -0.19
HOXC4-201ENST00000303406 DAZ3Q9NR90 486 aaKnown RBP13.89□□□□□ -0.19
HOXC4-201ENST00000303406 SMIM9A6NGZ8 99 aa13.88□□□□□ -0.19
HOXC4-201ENST00000303406 ZNRF2Q8NHG8 242 aa13.88□□□□□ -0.19
HOXC4-201ENST00000303406 UBE2D4Q9Y2X8 147 aa13.88□□□□□ -0.19
HOXC4-201ENST00000303406 WIPF1O43516 503 aa13.87□□□□□ -0.19
HOXC4-201ENST00000303406 NOTCH2Q04721 2471 aa13.87□□□□□ -0.19
HOXC4-201ENST00000303406 TRBV6-4A0A1B0GX49 114 aa13.86□□□□□ -0.19
HOXC4-201ENST00000303406 KIR2DL5BQ8NHK3 375 aa13.86□□□□□ -0.19
HOXC4-201ENST00000303406 FAM104AQ969W3 186 aa13.86□□□□□ -0.19
HOXC4-201ENST00000303406 OPRPNQ99935 248 aaPredicted RBP13.86□□□□□ -0.19
HOXC4-201ENST00000303406 C2CD3Q4AC94 2353 aa13.86□□□□□ -0.19
HOXC4-201ENST00000303406 UBE2D3P61077 147 aa13.85□□□□□ -0.19
HOXC4-201ENST00000303406 UBE2D2P62837 147 aa13.85□□□□□ -0.19
HOXC4-201ENST00000303406 MRPS36P82909 103 aaKnown RBP13.85□□□□□ -0.19
HOXC4-201ENST00000303406 LINC00612Q8N6U2 182 aa13.85□□□□□ -0.19
HOXC4-201ENST00000303406 TM2D2Q9BX73 214 aa13.85□□□□□ -0.19
HOXC4-201ENST00000303406 SETD2Q9BYW2 2564 aaPredicted RBP13.85□□□□□ -0.19
HOXC4-201ENST00000303406 TRGV2A0A075B6R0 118 aa13.85□□□□□ -0.19
HOXC4-201ENST00000303406 SLC25A29Q8N8R3 303 aa13.85□□□□□ -0.19
HOXC4-201ENST00000303406 PHLDA1Q8WV24 401 aaPredicted RBP13.85□□□□□ -0.19
HOXC4-201ENST00000303406 GAGE12BA1L429 117 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 H3BRM9 83 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 GAGE7O76087 117 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 GAGE12FP0CL80 117 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 GAGE12GP0CL81 117 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 GAGE12IP0CL82 117 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 TMEM170BQ5T4T1 132 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 SPATA3Q8NHX4 192 aa13.84□□□□□ -0.19
HOXC4-201ENST00000303406 TMEM223A0PJW6 202 aa13.83□□□□□ -0.2
HOXC4-201ENST00000303406 EMP1P54849 157 aa13.83□□□□□ -0.2
HOXC4-201ENST00000303406 SMAGPQ0VAQ4 97 aa13.83□□□□□ -0.2
HOXC4-201ENST00000303406 IGHV3-38A0A0C4DH36 116 aa13.82□□□□□ -0.2
HOXC4-201ENST00000303406 ZNF22P17026 224 aaPredicted RBP13.82□□□□□ -0.2
HOXC4-201ENST00000303406 CEND1Q8N111 149 aa13.82□□□□□ -0.2
HOXC4-201ENST00000303406 GTSF1LQ9H1H1 148 aa13.82□□□□□ -0.2
HOXC4-201ENST00000303406 HIVEP1P15822 2718 aa13.82□□□□□ -0.2
HOXC4-201ENST00000303406 ZNF815PA8K554 130 aa13.81□□□□□ -0.2
HOXC4-201ENST00000303406 CSDC2Q9Y534 153 aaKnown RBP13.81□□□□□ -0.2
HOXC4-201ENST00000303406 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.8□□□□□ -0.2
HOXC4-201ENST00000303406 IGKV2-29A2NJV5 120 aaPredicted RBP13.8□□□□□ -0.2
HOXC4-201ENST00000303406 LEPROTO15243 131 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 APOC4P55056 127 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 X6R8D5 127 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 A0A0J9YXV3 536 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 TINCRA0A1B0GVN0 87 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 GCSHP23434 173 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 SBSPONQ8IVN8 264 aa13.8□□□□□ -0.2
HOXC4-201ENST00000303406 FHL2Q14192 279 aa13.79□□□□□ -0.2
HOXC4-201ENST00000303406 Q6ZVH6 145 aa13.79□□□□□ -0.2
HOXC4-201ENST00000303406 PLEKHB2Q96CS7 222 aa13.79□□□□□ -0.2
HOXC4-201ENST00000303406 TRGV4A0A0C4DH28 118 aa13.78□□□□□ -0.2
HOXC4-201ENST00000303406 GAGE12JA6NER3 117 aa13.78□□□□□ -0.2
HOXC4-201ENST00000303406 H7C423 109 aa13.78□□□□□ -0.2
HOXC4-201ENST00000303406 GAGE4Q13068 117 aa13.78□□□□□ -0.2
HOXC4-201ENST00000303406 GAGE5Q13069 117 aa13.78□□□□□ -0.2
HOXC4-201ENST00000303406 GAGE13Q4V321 117 aa13.78□□□□□ -0.2
HOXC4-201ENST00000303406 J3QQQ9 107 aa13.77□□□□□ -0.21
HOXC4-201ENST00000303406 LINC00694P0DN24 101 aa13.77□□□□□ -0.21
HOXC4-201ENST00000303406 FXYD2P54710 66 aa13.77□□□□□ -0.21
HOXC4-201ENST00000303406 CEMP1Q6PRD7 247 aaPredicted RBP13.77□□□□□ -0.21
HOXC4-201ENST00000303406 Q6ZUT4 128 aa13.77□□□□□ -0.21
HOXC4-201ENST00000303406 C9orf118A6NHY6 69 aa13.76□□□□□ -0.21
HOXC4-201ENST00000303406 SMIM13P0DJ93 91 aa13.76□□□□□ -0.21
HOXC4-201ENST00000303406 UBE2V1Q13404 147 aa13.76□□□□□ -0.21
HOXC4-201ENST00000303406 NTM-AS1Q6ZSK4 140 aa13.76□□□□□ -0.21
HOXC4-201ENST00000303406 FAM19A3Q7Z5A8 133 aa13.76□□□□□ -0.21
HOXC4-201ENST00000303406 HIST1H4GQ99525 98 aa13.76□□□□□ -0.21
HOXC4-201ENST00000303406 LYRM9A8MSI8 78 aa13.75□□□□□ -0.21
HOXC4-201ENST00000303406 LGALS3P17931 250 aaKnown RBP13.75□□□□□ -0.21
HOXC4-201ENST00000303406 TIRAPP58753 221 aa13.75□□□□□ -0.21
HOXC4-201ENST00000303406 DGAT2L7PQ6IED9 249 aa13.75□□□□□ -0.21
HOXC4-201ENST00000303406 SPANXB1Q9NS25 103 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms