RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 VCX2Q9H322 139 aa17.33■□□□□ 0.37
TRIM54-201ENST00000296098 ANK3Q12955 4377 aaKnown RBP17.33■□□□□ 0.36
TRIM54-201ENST00000296098 ADARB2-AS1A8MUL3 147 aa17.33■□□□□ 0.36
TRIM54-201ENST00000296098 HELZ2Q9BYK8 2649 aaKnown RBP17.32■□□□□ 0.36
TRIM54-201ENST00000296098 UNC79Q9P2D8 2635 aa17.32■□□□□ 0.36
TRIM54-201ENST00000296098 ITPR2Q14571 2701 aa17.32■□□□□ 0.36
TRIM54-201ENST00000296098 FABP2P12104 132 aa17.32■□□□□ 0.36
TRIM54-201ENST00000296098 IGLV1-51P01701 117 aa17.31■□□□□ 0.36
TRIM54-201ENST00000296098 RNASE8Q8TDE3 154 aaKnown RBP17.31■□□□□ 0.36
TRIM54-201ENST00000296098 TSPEAR-AS2P59090 65 aa17.31■□□□□ 0.36
TRIM54-201ENST00000296098 SPCS1Q9Y6A9 102 aa17.31■□□□□ 0.36
TRIM54-201ENST00000296098 C12orf74Q32Q52 190 aa17.3■□□□□ 0.36
TRIM54-201ENST00000296098 SMR3AQ99954 134 aa17.3■□□□□ 0.36
TRIM54-201ENST00000296098 CHCHD7Q9BUK0 85 aa17.3■□□□□ 0.36
TRIM54-201ENST00000296098 TRGV1A0A0A0MS02 117 aa17.29■□□□□ 0.36
TRIM54-201ENST00000296098 GAGE12BA1L429 117 aa17.29■□□□□ 0.36
TRIM54-201ENST00000296098 ZNF22P17026 224 aaPredicted RBP17.29■□□□□ 0.36
TRIM54-201ENST00000296098 TMEM263Q8WUH6 116 aaKnown RBP17.29■□□□□ 0.36
TRIM54-201ENST00000296098 FAM110AQ9BQ89 295 aa17.29■□□□□ 0.36
TRIM54-201ENST00000296098 TMEM223A0PJW6 202 aa17.28■□□□□ 0.36
TRIM54-201ENST00000296098 CRYBA4P53673 196 aa17.28■□□□□ 0.36
TRIM54-201ENST00000296098 AMELXQ99217 191 aa17.28■□□□□ 0.36
TRIM54-201ENST00000296098 A0A0J9YXV3 536 aa17.28■□□□□ 0.36
TRIM54-201ENST00000296098 J3QQQ9 107 aa17.28■□□□□ 0.36
TRIM54-201ENST00000296098 A0A1B0GWB2 263 aa17.27■□□□□ 0.36
TRIM54-201ENST00000296098 LGALS3P17931 250 aaKnown RBP17.27■□□□□ 0.36
TRIM54-201ENST00000296098 OR5A1Q8NGJ0 315 aa17.27■□□□□ 0.36
TRIM54-201ENST00000296098 FAM104AQ969W3 186 aa17.27■□□□□ 0.36
TRIM54-201ENST00000296098 SPANXA1Q9NS26 97 aa17.27■□□□□ 0.36
TRIM54-201ENST00000296098 COTL1Q14019 142 aa17.26■□□□□ 0.35
TRIM54-201ENST00000296098 WFDC10AQ9H1F0 79 aa17.26■□□□□ 0.35
TRIM54-201ENST00000296098 A0A0J9YY99 117 aa17.26■□□□□ 0.35
TRIM54-201ENST00000296098 LEPROTO15243 131 aa17.26■□□□□ 0.35
TRIM54-201ENST00000296098 SRSF9Q13242 221 aaKnown RBP eCLIP17.26■□□□□ 0.35
TRIM54-201ENST00000296098 CEMP1Q6PRD7 247 aaPredicted RBP17.26■□□□□ 0.35
TRIM54-201ENST00000296098 MTORP42345 2549 aa17.26■□□□□ 0.35
TRIM54-201ENST00000296098 IGHV3-38A0A0C4DH36 116 aa17.25■□□□□ 0.35
TRIM54-201ENST00000296098 UBE2D4Q9Y2X8 147 aa17.25■□□□□ 0.35
TRIM54-201ENST00000296098 IGLL5B9A064 214 aa17.25■□□□□ 0.35
TRIM54-201ENST00000296098 GIG44P09565 113 aaPredicted RBP17.25■□□□□ 0.35
TRIM54-201ENST00000296098 C19orf73Q9NVV2 129 aa17.25■□□□□ 0.35
TRIM54-201ENST00000296098 IGKV2D-29A0A075B6S2 120 aaPredicted RBP17.24■□□□□ 0.35
TRIM54-201ENST00000296098 TMEM238LA0A1B0GVL6 79 aa17.24■□□□□ 0.35
TRIM54-201ENST00000296098 IGKV2-29A2NJV5 120 aaPredicted RBP17.24■□□□□ 0.35
TRIM54-201ENST00000296098 A6NJY4 79 aa17.24■□□□□ 0.35
TRIM54-201ENST00000296098 Q6ZTI0 123 aa17.23■□□□□ 0.35
TRIM54-201ENST00000296098 ZNF479Q96JC4 524 aa17.23■□□□□ 0.35
TRIM54-201ENST00000296098 RPL35AP18077 110 aaKnown RBP17.22■□□□□ 0.35
TRIM54-201ENST00000296098 MRPS36P82909 103 aaKnown RBP17.22■□□□□ 0.35
TRIM54-201ENST00000296098 SPANXB1Q9NS25 103 aaPredicted RBP17.22■□□□□ 0.35
TRIM54-201ENST00000296098 TRAV4A0A0B4J268 109 aa17.21■□□□□ 0.35
TRIM54-201ENST00000296098 LY6G6DO95868 133 aa17.21■□□□□ 0.35
TRIM54-201ENST00000296098 RNASE13Q5GAN3 156 aaKnown RBP17.21■□□□□ 0.35
TRIM54-201ENST00000296098 NDUFA11Q86Y39 141 aa17.21■□□□□ 0.35
TRIM54-201ENST00000296098 C16orf74Q96GX8 76 aa17.2■□□□□ 0.34
TRIM54-201ENST00000296098 SETD2Q9BYW2 2564 aaPredicted RBP17.2■□□□□ 0.34
TRIM54-201ENST00000296098 IGHV3-64A0A075B6Q5 118 aa17.2■□□□□ 0.34
TRIM54-201ENST00000296098 K7EQD1 137 aa17.2■□□□□ 0.34
TRIM54-201ENST00000296098 RRN3P1Q2M238 152 aa17.2■□□□□ 0.34
TRIM54-201ENST00000296098 SLC25A29Q8N8R3 303 aa17.2■□□□□ 0.34
TRIM54-201ENST00000296098 C1QTNF4Q9BXJ3 329 aa17.2■□□□□ 0.34
TRIM54-201ENST00000296098 FASNP49327 2511 aaKnown RBP17.19■□□□□ 0.34
TRIM54-201ENST00000296098 DAZ2Q13117 558 aaKnown RBP17.19■□□□□ 0.34
TRIM54-201ENST00000296098 Q6ZUT4 128 aa17.19■□□□□ 0.34
TRIM54-201ENST00000296098 NOP10Q9NPE3 64 aaKnown RBP17.19■□□□□ 0.34
TRIM54-201ENST00000296098 KRTAP10-3P60369 221 aa17.18■□□□□ 0.34
TRIM54-201ENST00000296098 TRBV10-1A0A0K0K1A3 114 aa17.18■□□□□ 0.34
TRIM54-201ENST00000296098 OCIAD2Q56VL3 154 aa17.18■□□□□ 0.34
TRIM54-201ENST00000296098 UBE2D1P51668 147 aa17.17■□□□□ 0.34
TRIM54-201ENST00000296098 RPL36AP83881 106 aaKnown RBP17.17■□□□□ 0.34
TRIM54-201ENST00000296098 RPL36ALQ969Q0 106 aaKnown RBP17.17■□□□□ 0.34
TRIM54-201ENST00000296098 TINCRA0A1B0GVN0 87 aa17.16■□□□□ 0.34
TRIM54-201ENST00000296098 PF4P02776 101 aa17.16■□□□□ 0.34
TRIM54-201ENST00000296098 TIMM21Q9BVV7 248 aa17.16■□□□□ 0.34
TRIM54-201ENST00000296098 SETXQ7Z333 2677 aaKnown RBP17.16■□□□□ 0.34
TRIM54-201ENST00000296098 HIVEP2P31629 2446 aa17.16■□□□□ 0.34
TRIM54-201ENST00000296098 PLAC8L1A1L4L8 177 aa17.15■□□□□ 0.34
TRIM54-201ENST00000296098 IGHV3-30P01768 117 aa17.15■□□□□ 0.34
TRIM54-201ENST00000296098 IGHV3-30-5P0DP03 117 aa17.15■□□□□ 0.34
TRIM54-201ENST00000296098 CSNK1G2-AS1Q8NCQ2 148 aa17.14■□□□□ 0.34
TRIM54-201ENST00000296098 RBX1P62877 108 aa17.14■□□□□ 0.33
TRIM54-201ENST00000296098 IGHV3-30-3P0DP02 117 aa17.13■□□□□ 0.33
TRIM54-201ENST00000296098 PGPEP1Q9NXJ5 209 aa17.13■□□□□ 0.33
TRIM54-201ENST00000296098 LINC00482Q8N8I6 264 aa17.13■□□□□ 0.33
TRIM54-201ENST00000296098 DAZ4Q86SG3 579 aaKnown RBP17.12■□□□□ 0.33
TRIM54-201ENST00000296098 DAZ3Q9NR90 486 aaKnown RBP17.12■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE7O76087 117 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE12FP0CL80 117 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE12GP0CL81 117 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE12IP0CL82 117 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 UBE2D3P61077 147 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 UBE2D2P62837 147 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 DGAT2L7PQ6IED9 249 aa17.11■□□□□ 0.33
TRIM54-201ENST00000296098 GCN1Q92616 2671 aaKnown RBP17.1■□□□□ 0.33
TRIM54-201ENST00000296098 TRGV2A0A075B6R0 118 aa17.1■□□□□ 0.33
TRIM54-201ENST00000296098 IGHV1-58A0A0C4DH39 117 aa17.1■□□□□ 0.33
TRIM54-201ENST00000296098 C10orf126Q8N4M7 172 aa17.1■□□□□ 0.33
TRIM54-201ENST00000296098 TRAV8-3A0A0A6YYJ7 113 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 OVOL2Q9BRP0 275 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 GEMIN7Q9H840 131 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 178.6 ms