RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 UBE2V1Q13404 147 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 TAL2Q16559 108 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 OR4C5Q8NGB2 326 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 C1QTNF4Q9BXJ3 329 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 INAFM1C9JVW0 142 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 RPL35AP18077 110 aaKnown RBP9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 OPRPNQ99935 248 aaPredicted RBP9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 WFDC10AQ9H1F0 79 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 PYGO1Q9Y3Y4 419 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 GIG44P09565 113 aaPredicted RBP9.33□□□□□ -0.92
SPTLC1-201ENST00000262554 CEND1Q8N111 149 aa9.33□□□□□ -0.92
SPTLC1-201ENST00000262554 VCX2Q9H322 139 aa9.33□□□□□ -0.92
SPTLC1-201ENST00000262554 IGLV4-3A0A075B6K6 122 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 TMEM170BQ5T4T1 132 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 NFE4Q86UQ8 179 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 Q9UF83 564 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 ZNF815PA8K554 130 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 CCL25O15444 150 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 LINC00482Q8N8I6 264 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 ZNRF2Q8NHG8 242 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 C16orf74Q96GX8 76 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 TM2D2Q9BX73 214 aa9.32□□□□□ -0.92
SPTLC1-201ENST00000262554 SETD2Q9BYW2 2564 aaPredicted RBP9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 C9orf118A6NHY6 69 aa9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 SMIM13P0DJ93 91 aa9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 CRYBA4P53673 196 aa9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 FXYD2P54710 66 aa9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 COTL1Q14019 142 aa9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 HIST1H4GQ99525 98 aa9.31□□□□□ -0.92
SPTLC1-201ENST00000262554 TRAV4A0A0B4J268 109 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 DAZ2Q13117 558 aaKnown RBP9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 AMMECR1LQ6DCA0 310 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 Q6ZTI0 123 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 CHCHD7Q9BUK0 85 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 HECTD1Q9ULT8 2610 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 PHLDA1Q8WV24 401 aaPredicted RBP9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 ZNF479Q96JC4 524 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 NOP10Q9NPE3 64 aaKnown RBP9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 SPANXA1Q9NS26 97 aa9.3□□□□□ -0.92
SPTLC1-201ENST00000262554 ANK3Q12955 4377 aaKnown RBP9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 IGHV3-38A0A0C4DH36 116 aa9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 FOSL1P15407 271 aa9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 SCGB1D4Q6XE38 83 aa9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 CSNK1G2-AS1Q8NCQ2 148 aa9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 RAB37Q96AX2 223 aa9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 AMELXQ99217 191 aa9.29□□□□□ -0.92
SPTLC1-201ENST00000262554 SETXQ7Z333 2677 aaKnown RBP9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 TRBV7-3A0A075B6L6 115 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 TRBV10-1A0A0K0K1A3 114 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 K7EP13 123 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 RRN3P1Q2M238 152 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 A0A0J9YXV3 536 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 H3BUT2 72 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 K7EQD1 137 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 RPL36AP83881 106 aaKnown RBP9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 RPL36ALQ969Q0 106 aaKnown RBP9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 NHP2Q9NX24 153 aaKnown RBP9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 UBE2D4Q9Y2X8 147 aa9.28□□□□□ -0.92
SPTLC1-201ENST00000262554 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 TMEM223A0PJW6 202 aa9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 PLAC8L1A1L4L8 177 aa9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 IGKV2-29A2NJV5 120 aaPredicted RBP9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 INSL3P51460 131 aa9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 CEMP1Q6PRD7 247 aaPredicted RBP9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 FAM104AQ969W3 186 aa9.27□□□□□ -0.93
SPTLC1-201ENST00000262554 ZNF22P17026 224 aaPredicted RBP9.26□□□□□ -0.93
SPTLC1-201ENST00000262554 LGALS3P17931 250 aaKnown RBP9.26□□□□□ -0.93
SPTLC1-201ENST00000262554 OVOL2Q9BRP0 275 aa9.26□□□□□ -0.93
SPTLC1-201ENST00000262554 TRGV2A0A075B6R0 118 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 J3QQQ9 107 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 LEPROTO15243 131 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 CIDEAO60543 219 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 MRPS36P82909 103 aaKnown RBP9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 C9orf66Q5T8R8 295 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 PLEKHB2Q96CS7 222 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE12BA1L429 117 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 CRLF1O75462 422 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE7O76087 117 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE12FP0CL80 117 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE12GP0CL81 117 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE12IP0CL82 117 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 TSPEAR-AS2P59090 65 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 OTOGQ6ZRI0 2925 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GTF2H5Q6ZYL4 71 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 DAZ4Q86SG3 579 aaKnown RBP9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 SLC25A29Q8N8R3 303 aa9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 DAZ3Q9NR90 486 aaKnown RBP9.25□□□□□ -0.93
SPTLC1-201ENST00000262554 GAGE10A6NGK3 116 aa9.24□□□□□ -0.93
SPTLC1-201ENST00000262554 K7ERJ3 54 aa9.24□□□□□ -0.93
SPTLC1-201ENST00000262554 SRSF9Q13242 221 aaKnown RBP eCLIP9.24□□□□□ -0.93
SPTLC1-201ENST00000262554 NAA38Q9BRA0 125 aaKnown RBP9.24□□□□□ -0.93
SPTLC1-201ENST00000262554 TIMM21Q9BVV7 248 aa9.24□□□□□ -0.93
SPTLC1-201ENST00000262554 A0A1W2PPM0 123 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 RNASE13Q5GAN3 156 aaKnown RBP9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 LCE2CQ5TA81 110 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 DGAT2L7PQ6IED9 249 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 A0A0J9YY99 117 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 UBE2D3P61077 147 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 UBE2D2P62837 147 aa9.23□□□□□ -0.93
SPTLC1-201ENST00000262554 C12orf74Q32Q52 190 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms