RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 SMIM13P0DJ93 91 aa13.59□□□□□ -0.23
PDLIM4-201ENST00000253754 RHOHQ15669 191 aa13.59□□□□□ -0.23
PDLIM4-201ENST00000253754 HIST1H4GQ99525 98 aa13.59□□□□□ -0.23
PDLIM4-201ENST00000253754 INSP01308 110 aa13.59□□□□□ -0.23
PDLIM4-201ENST00000253754 GAGE10A6NGK3 116 aa13.58□□□□□ -0.24
PDLIM4-201ENST00000253754 AZU1P20160 251 aa13.58□□□□□ -0.24
PDLIM4-201ENST00000253754 C20orf203Q8NBC4 194 aa13.58□□□□□ -0.24
PDLIM4-201ENST00000253754 IGHV3OR16-12A0A075B7B8 117 aa13.57□□□□□ -0.24
PDLIM4-201ENST00000253754 LINC01549A6NIU2 74 aa13.57□□□□□ -0.24
PDLIM4-201ENST00000253754 ZNF815PA8K554 130 aa13.57□□□□□ -0.24
PDLIM4-201ENST00000253754 CFAP126Q5VTH2 177 aa13.57□□□□□ -0.24
PDLIM4-201ENST00000253754 PLEKHB2Q96CS7 222 aa13.57□□□□□ -0.24
PDLIM4-201ENST00000253754 PHLDA1Q8WV24 401 aaPredicted RBP13.57□□□□□ -0.24
PDLIM4-201ENST00000253754 TRBV7-3A0A075B6L6 115 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 A8MWV9 139 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 KRTAP10-3P60369 221 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 TMEM170BQ5T4T1 132 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 A0A1W2PPM0 123 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 ADARB2-AS1A8MUL3 147 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 STHQ8IWL8 128 aa13.56□□□□□ -0.24
PDLIM4-201ENST00000253754 TSPEAR-AS2P59090 65 aa13.55□□□□□ -0.24
PDLIM4-201ENST00000253754 NACAE9PAV3 2078 aa13.54□□□□□ -0.24
PDLIM4-201ENST00000253754 K7EP34 96 aa13.54□□□□□ -0.24
PDLIM4-201ENST00000253754 EDA2RQ9HAV5 297 aa13.54□□□□□ -0.24
PDLIM4-201ENST00000253754 TNFRSF18Q9Y5U5 241 aa13.54□□□□□ -0.24
PDLIM4-201ENST00000253754 TRAV25A0A0B4J276 109 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 TAL2Q16559 108 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 SAMD5Q5TGI4 173 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 CEMP1Q6PRD7 247 aaPredicted RBP13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 C1orf158Q8N1D5 194 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 IGLV4-3A0A075B6K6 122 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 GAGE12BA1L429 117 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 PAPPA-AS1Q5QFB9 102 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 SCGB1D4Q6XE38 83 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 VWFP04275 2813 aa13.53□□□□□ -0.24
PDLIM4-201ENST00000253754 LINC00467Q9BRT7 94 aa13.52□□□□□ -0.24
PDLIM4-201ENST00000253754 WFDC10AQ9H1F0 79 aa13.52□□□□□ -0.24
PDLIM4-201ENST00000253754 SAP30O75446 220 aa13.52□□□□□ -0.25
PDLIM4-201ENST00000253754 HERVK_113P61574 105 aa13.52□□□□□ -0.25
PDLIM4-201ENST00000253754 SPCS1Q9Y6A9 102 aa13.52□□□□□ -0.25
PDLIM4-201ENST00000253754 IGHV3-38A0A0C4DH36 116 aa13.51□□□□□ -0.25
PDLIM4-201ENST00000253754 GTF2H5Q6ZYL4 71 aa13.51□□□□□ -0.25
PDLIM4-201ENST00000253754 FAM104AQ969W3 186 aa13.51□□□□□ -0.25
PDLIM4-201ENST00000253754 C12orf74Q32Q52 190 aa13.51□□□□□ -0.25
PDLIM4-201ENST00000253754 RNASE13Q5GAN3 156 aaKnown RBP13.51□□□□□ -0.25
PDLIM4-201ENST00000253754 TRRAPQ9Y4A5 3859 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 COL6A5A8TX70 2615 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 IGHV3-64A0A075B6Q5 118 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 A0A0J9YXV3 536 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 FABP2P12104 132 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 BEAN1Q3B7T3 259 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 PIK3CD-AS1Q5SR53 167 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 NDUFA11Q86Y39 141 aa13.5□□□□□ -0.25
PDLIM4-201ENST00000253754 NFE4Q86UQ8 179 aa13.49□□□□□ -0.25
PDLIM4-201ENST00000253754 PTH2Q96A98 100 aa13.49□□□□□ -0.25
PDLIM4-201ENST00000253754 CLUHP3Q96NS8 147 aa13.49□□□□□ -0.25
PDLIM4-201ENST00000253754 SPXQ9BT56 116 aa13.49□□□□□ -0.25
PDLIM4-201ENST00000253754 VCX2Q9H322 139 aa13.49□□□□□ -0.25
PDLIM4-201ENST00000253754 STAB1Q9NY15 2570 aa13.49□□□□□ -0.25
PDLIM4-201ENST00000253754 G3V4G9 280 aa13.48□□□□□ -0.25
PDLIM4-201ENST00000253754 RS1O15537 224 aa13.48□□□□□ -0.25
PDLIM4-201ENST00000253754 CHCHD7Q9BUK0 85 aa13.48□□□□□ -0.25
PDLIM4-201ENST00000253754 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 TRGV1A0A0A0MS02 117 aa13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 IGKV2-29A2NJV5 120 aaPredicted RBP13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 IGLL5B9A064 214 aa13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 IGHV3-53P01767 116 aa13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 ZNF22P17026 224 aaPredicted RBP13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 AMELXQ99217 191 aa13.47□□□□□ -0.25
PDLIM4-201ENST00000253754 A0A0J9YY99 117 aa13.46□□□□□ -0.25
PDLIM4-201ENST00000253754 RHODO00212 210 aa13.46□□□□□ -0.25
PDLIM4-201ENST00000253754 SRSF9Q13242 221 aaKnown RBP eCLIP13.46□□□□□ -0.25
PDLIM4-201ENST00000253754 NOTCH3Q9UM47 2321 aa13.46□□□□□ -0.25
PDLIM4-201ENST00000253754 TMEM223A0PJW6 202 aa13.46□□□□□ -0.26
PDLIM4-201ENST00000253754 J3QQQ9 107 aa13.46□□□□□ -0.26
PDLIM4-201ENST00000253754 IL17DQ8TAD2 202 aa13.46□□□□□ -0.26
PDLIM4-201ENST00000253754 GIG44P09565 113 aaPredicted RBP13.45□□□□□ -0.26
PDLIM4-201ENST00000253754 PF4P02776 101 aa13.44□□□□□ -0.26
PDLIM4-201ENST00000253754 Q6ZTI0 123 aa13.44□□□□□ -0.26
PDLIM4-201ENST00000253754 ZNF479Q96JC4 524 aa13.44□□□□□ -0.26
PDLIM4-201ENST00000253754 PYGO1Q9Y3Y4 419 aa13.44□□□□□ -0.26
PDLIM4-201ENST00000253754 RPL35AP18077 110 aaKnown RBP13.44□□□□□ -0.26
PDLIM4-201ENST00000253754 A0A1B0GWB2 263 aa13.43□□□□□ -0.26
PDLIM4-201ENST00000253754 SCGB1A1P11684 91 aa13.43□□□□□ -0.26
PDLIM4-201ENST00000253754 LGALS3P17931 250 aaKnown RBP13.43□□□□□ -0.26
PDLIM4-201ENST00000253754 UBE2D4Q9Y2X8 147 aa13.43□□□□□ -0.26
PDLIM4-201ENST00000253754 IGLV1-51P01701 117 aa13.42□□□□□ -0.26
PDLIM4-201ENST00000253754 PRIMA1Q86XR5 153 aa13.42□□□□□ -0.26
PDLIM4-201ENST00000253754 OR5A1Q8NGJ0 315 aa13.42□□□□□ -0.26
PDLIM4-201ENST00000253754 C19orf73Q9NVV2 129 aa13.42□□□□□ -0.26
PDLIM4-201ENST00000253754 Q6ZUT4 128 aa13.41□□□□□ -0.26
PDLIM4-201ENST00000253754 LEPROTO15243 131 aa13.41□□□□□ -0.26
PDLIM4-201ENST00000253754 RRN3P1Q2M238 152 aa13.4□□□□□ -0.26
PDLIM4-201ENST00000253754 TMEM263Q8WUH6 116 aaKnown RBP13.4□□□□□ -0.26
PDLIM4-201ENST00000253754 DNAJC30Q96LL9 226 aa13.4□□□□□ -0.26
PDLIM4-201ENST00000253754 NOP10Q9NPE3 64 aaKnown RBP13.4□□□□□ -0.26
PDLIM4-201ENST00000253754 LINC00482Q8N8I6 264 aa13.39□□□□□ -0.27
PDLIM4-201ENST00000253754 MRPS36P82909 103 aaKnown RBP13.39□□□□□ -0.27
PDLIM4-201ENST00000253754 SLC25A29Q8N8R3 303 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms