RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TCL1BO95988 128 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 TMEM141Q96I45 108 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 TIMM17AQ99595 171 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 PRO0461Q9UI25 63 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 TRBV7-9A0A0J9YWB2 115 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 IGHV3-30P01768 117 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 IGHV3-30-5P0DP03 117 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 ZNF22P17026 224 aaPredicted RBP15.6■□□□□ 0.09
TRIM28-201ENST00000253024 DYNLRB2Q8TF09 96 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 TNFRSF18Q9Y5U5 241 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 BRI3O95415 125 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 POM121L12Q8N7R1 296 aa15.6■□□□□ 0.09
TRIM28-201ENST00000253024 SAMD13Q5VXD3 122 aa15.59■□□□□ 0.09
TRIM28-201ENST00000253024 HIVEP2P31629 2446 aa15.59■□□□□ 0.09
TRIM28-201ENST00000253024 SPINK8P0C7L1 97 aa15.59■□□□□ 0.09
TRIM28-201ENST00000253024 NFE4Q86UQ8 179 aa15.59■□□□□ 0.09
TRIM28-201ENST00000253024 MUSTN1Q8IVN3 82 aa15.59■□□□□ 0.09
TRIM28-201ENST00000253024 Q96MF0 132 aa15.59■□□□□ 0.09
TRIM28-201ENST00000253024 IGHV4-31P0DP07 118 aa15.58■□□□□ 0.09
TRIM28-201ENST00000253024 UBE2D1P51668 147 aa15.58■□□□□ 0.09
TRIM28-201ENST00000253024 Q5PR19 223 aa15.58■□□□□ 0.09
TRIM28-201ENST00000253024 ZNF625Q96I27 306 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-201ENST00000253024 GCN1Q92616 2671 aaKnown RBP15.58■□□□□ 0.08
TRIM28-201ENST00000253024 AMELXQ99217 191 aa15.57■□□□□ 0.08
TRIM28-201ENST00000253024 RHODO00212 210 aa15.57■□□□□ 0.08
TRIM28-201ENST00000253024 CIDEAO60543 219 aa15.57■□□□□ 0.08
TRIM28-201ENST00000253024 UBR5O95071 2799 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-201ENST00000253024 A0A096LNT2 108 aa15.57■□□□□ 0.08
TRIM28-201ENST00000253024 EIF4EBP3O60516 100 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-201ENST00000253024 C10orf126Q8N4M7 172 aa15.57■□□□□ 0.08
TRIM28-201ENST00000253024 H3BMM0 161 aa15.56■□□□□ 0.08
TRIM28-201ENST00000253024 Q6YL49 198 aa15.56■□□□□ 0.08
TRIM28-201ENST00000253024 SLC25A29Q8N8R3 303 aa15.56■□□□□ 0.08
TRIM28-201ENST00000253024 NDUFA7O95182 113 aa15.55■□□□□ 0.08
TRIM28-201ENST00000253024 TRGV11A0A075B6L2 103 aa15.55■□□□□ 0.08
TRIM28-201ENST00000253024 TMEM223A0PJW6 202 aa15.55■□□□□ 0.08
TRIM28-201ENST00000253024 ELANEP08246 267 aa15.55■□□□□ 0.08
TRIM28-201ENST00000253024 GATA3P23771 443 aa15.55■□□□□ 0.08
TRIM28-201ENST00000253024 TRBV6-5A0A0K0K1A5 114 aa15.54■□□□□ 0.08
TRIM28-201ENST00000253024 PAPPA-AS1Q5QFB9 102 aa15.54■□□□□ 0.08
TRIM28-201ENST00000253024 CR1P17927 2039 aa15.54■□□□□ 0.08
TRIM28-201ENST00000253024 SIGMAR1Q99720 223 aa15.54■□□□□ 0.08
TRIM28-201ENST00000253024 IGHV3-30-3P0DP02 117 aa15.53■□□□□ 0.08
TRIM28-201ENST00000253024 CFAP126Q5VTH2 177 aa15.53■□□□□ 0.08
TRIM28-201ENST00000253024 Q6ZUT4 128 aa15.53■□□□□ 0.08
TRIM28-201ENST00000253024 LINC00467Q9BRT7 94 aa15.53■□□□□ 0.08
TRIM28-201ENST00000253024 NSUN5P1Q3KNT7 163 aa15.52■□□□□ 0.07
TRIM28-201ENST00000253024 PRO1854Q9UHT4 67 aa15.52■□□□□ 0.07
TRIM28-201ENST00000253024 TIMM21Q9BVV7 248 aa15.51■□□□□ 0.07
TRIM28-201ENST00000253024 WFDC10AQ9H1F0 79 aa15.51■□□□□ 0.07
TRIM28-201ENST00000253024 MAP6D1Q9H9H5 199 aa15.51■□□□□ 0.07
TRIM28-201ENST00000253024 LINC01619G3V211 115 aa15.51■□□□□ 0.07
TRIM28-201ENST00000253024 J3QR89 54 aa15.51■□□□□ 0.07
TRIM28-201ENST00000253024 TENM4Q6N022 2769 aa15.5■□□□□ 0.07
TRIM28-201ENST00000253024 C9JAW5 83 aa15.5■□□□□ 0.07
TRIM28-201ENST00000253024 ADAMTSL4-AS1Q5T5F5 129 aa15.5■□□□□ 0.07
TRIM28-201ENST00000253024 FAM104AQ969W3 186 aa15.5■□□□□ 0.07
TRIM28-201ENST00000253024 FHL3Q13643 280 aa15.5■□□□□ 0.07
TRIM28-201ENST00000253024 RHOHQ15669 191 aa15.5■□□□□ 0.07
TRIM28-201ENST00000253024 PLA2G2AP14555 144 aa15.49■□□□□ 0.07
TRIM28-201ENST00000253024 FOXI1Q12951 378 aa15.49■□□□□ 0.07
TRIM28-201ENST00000253024 TRGV1A0A0A0MS02 117 aa15.49■□□□□ 0.07
TRIM28-201ENST00000253024 DSCR9P59020 149 aa15.49■□□□□ 0.07
TRIM28-201ENST00000253024 RPL32P62910 135 aaKnown RBP15.49■□□□□ 0.07
TRIM28-201ENST00000253024 LEPROTO15243 131 aa15.48■□□□□ 0.07
TRIM28-201ENST00000253024 A0A0J9YXY3 114 aa15.48■□□□□ 0.07
TRIM28-201ENST00000253024 IGKV3OR2-268A0A0C4DH90 116 aa15.48■□□□□ 0.07
TRIM28-201ENST00000253024 M0R2P5 195 aa15.47■□□□□ 0.07
TRIM28-201ENST00000253024 ODF3Q96PU9 254 aa15.47■□□□□ 0.07
TRIM28-201ENST00000253024 DGAT2L7PQ6IED9 249 aa15.47■□□□□ 0.07
TRIM28-201ENST00000253024 UBE2D3P61077 147 aa15.46■□□□□ 0.07
TRIM28-201ENST00000253024 UBE2D2P62837 147 aa15.46■□□□□ 0.07
TRIM28-201ENST00000253024 WFDC11Q8NEX6 87 aa15.46■□□□□ 0.07
TRIM28-201ENST00000253024 FASNP49327 2511 aaKnown RBP15.46■□□□□ 0.06
TRIM28-201ENST00000253024 CARD19Q96LW7 228 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 C1QTNF4Q9BXJ3 329 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 NDUFA12Q9UI09 145 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 ERG28Q9UKR5 140 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 ANKRD29Q8N6D5 301 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 CLUHP3Q96NS8 147 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 GEMIN7Q9H840 131 aaKnown RBP15.45■□□□□ 0.06
TRIM28-201ENST00000253024 TRAV13-1A0A0B4J241 112 aa15.45■□□□□ 0.06
TRIM28-201ENST00000253024 HELZ2Q9BYK8 2649 aaKnown RBP15.45■□□□□ 0.06
TRIM28-201ENST00000253024 TMEM89A2RUT3 159 aa15.44■□□□□ 0.06
TRIM28-201ENST00000253024 ZNF415Q09FC8 603 aa15.44■□□□□ 0.06
TRIM28-201ENST00000253024 CDKN2A-AS1Q9UH64 79 aa15.44■□□□□ 0.06
TRIM28-201ENST00000253024 HECTD1Q9ULT8 2610 aa15.44■□□□□ 0.06
TRIM28-201ENST00000253024 CHCHD7Q9BUK0 85 aa15.44■□□□□ 0.06
TRIM28-201ENST00000253024 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-201ENST00000253024 MT-ATP8P03928 68 aa15.43■□□□□ 0.06
TRIM28-201ENST00000253024 DEFB114Q30KQ6 69 aa15.43■□□□□ 0.06
TRIM28-201ENST00000253024 J3QLI3 93 aa15.42■□□□□ 0.06
TRIM28-201ENST00000253024 IGHV3-33P01772 117 aa15.42■□□□□ 0.06
TRIM28-201ENST00000253024 LINC00694P0DN24 101 aa15.42■□□□□ 0.06
TRIM28-201ENST00000253024 RPL35AP18077 110 aaKnown RBP15.42■□□□□ 0.06
TRIM28-201ENST00000253024 COX6A2Q02221 97 aa15.42■□□□□ 0.06
TRIM28-201ENST00000253024 Q6ZTI0 123 aa15.42■□□□□ 0.06
TRIM28-201ENST00000253024 PEMTQ9UBM1 199 aa15.42■□□□□ 0.06
TRIM28-201ENST00000253024 A8MWV9 139 aa15.41■□□□□ 0.06
TRIM28-201ENST00000253024 DEFB113Q30KQ7 82 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms