RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ANK2Q01484 3957 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 PLA2G2AP14555 144 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 FOXI1Q12951 378 aa7.81□□□□□ -1.16
USP28-201ENST00000003302 IGHV1OR15-1A0A075B7D0 117 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 LGALS9O00182 355 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 NDUFS8O00217 210 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 GATA3P23771 443 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 MUSTN1Q8IVN3 82 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 SLC25A29Q8N8R3 303 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 TEP1Q99973 2627 aaKnown RBP7.8□□□□□ -1.16
USP28-201ENST00000003302 TAL2Q16559 108 aa7.8□□□□□ -1.16
USP28-201ENST00000003302 A0A0U1RRA0 63 aa7.79□□□□□ -1.16
USP28-201ENST00000003302 VCYO14598 125 aa7.79□□□□□ -1.16
USP28-201ENST00000003302 TCTEX1D4Q5JR98 221 aa7.79□□□□□ -1.16
USP28-201ENST00000003302 DEFB131AP59861 70 aa7.79□□□□□ -1.16
USP28-201ENST00000003302 A0A096LNT2 108 aa7.79□□□□□ -1.16
USP28-201ENST00000003302 C20orf203Q8NBC4 194 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 TMEM223A0PJW6 202 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 TMEM61Q8N0U2 210 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 BRI3O95415 125 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 HIST2H2BCQ6DN03 193 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 CLUHP3Q96NS8 147 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 BBC3Q96PG8 261 aaPredicted RBP7.78□□□□□ -1.16
USP28-201ENST00000003302 SPATA25Q9BR10 227 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 ANKRD29Q8N6D5 301 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 LITAFQ99732 161 aa7.78□□□□□ -1.16
USP28-201ENST00000003302 UNC79Q9P2D8 2635 aa7.77□□□□□ -1.16
USP28-201ENST00000003302 CD28P10747 220 aa7.77□□□□□ -1.17
USP28-201ENST00000003302 RHODO00212 210 aa7.77□□□□□ -1.17
USP28-201ENST00000003302 ZNF625Q96I27 306 aaPredicted RBP7.77□□□□□ -1.17
USP28-201ENST00000003302 SPINK8P0C7L1 97 aa7.77□□□□□ -1.17
USP28-201ENST00000003302 DLX4Q92988 240 aaPredicted RBP7.77□□□□□ -1.17
USP28-201ENST00000003302 IGHV3-30-3P0DP02 117 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 MED14OSP0DP75 135 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 Q5PR19 223 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 TIMM17AQ99595 171 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 HIVEP1P15822 2718 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 C1QTNF4Q9BXJ3 329 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 ZNF702PQ9H963 129 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 ATRQ13535 2644 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 Q6ZUT4 128 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 LINC00467Q9BRT7 94 aa7.76□□□□□ -1.17
USP28-201ENST00000003302 IGHV3OR16-12A0A075B7B8 117 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 CRLF1O75462 422 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 IGHV3-33P01772 117 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 LINC00694P0DN24 101 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 COX6A2Q02221 97 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 TMEM263Q8WUH6 116 aaKnown RBP7.75□□□□□ -1.17
USP28-201ENST00000003302 WFDC10AQ9H1F0 79 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 A0A0J9YXY3 114 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 LINC01619G3V211 115 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 TRBV6-5A0A0K0K1A5 114 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 B4DSR2 109 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 C9JAW5 83 aa7.75□□□□□ -1.17
USP28-201ENST00000003302 TEX49A0A1B0GTD5 131 aa7.74□□□□□ -1.17
USP28-201ENST00000003302 PRSS2P07478 247 aa7.74□□□□□ -1.17
USP28-201ENST00000003302 K7EMT4 169 aa7.74□□□□□ -1.17
USP28-201ENST00000003302 KHDC1LQ5JSQ8 128 aa7.74□□□□□ -1.17
USP28-201ENST00000003302 LGALS3P17931 250 aaKnown RBP7.74□□□□□ -1.17
USP28-201ENST00000003302 PRO1854Q9UHT4 67 aa7.74□□□□□ -1.17
USP28-201ENST00000003302 FBN1P35555 2871 aaKnown RBP7.74□□□□□ -1.17
USP28-201ENST00000003302 IGHV3-53P01767 116 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 UBE2E2Q96LR5 201 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 ATP6V0BQ99437 205 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 CHCHD7Q9BUK0 85 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 TRIAP1O43715 76 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 SCGB1C2P0DMR2 95 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 SNRPD3P62318 126 aaKnown RBP7.73□□□□□ -1.17
USP28-201ENST00000003302 NSUN5P1Q3KNT7 163 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 CLEC2BQ92478 149 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 A0A1W2PRX2 142 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 H3BUA1 57 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 ID1P41134 155 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 XCL2Q9UBD3 114 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 CDKN2A-AS1Q9UH64 79 aa7.73□□□□□ -1.17
USP28-201ENST00000003302 H3BMM0 161 aa7.72□□□□□ -1.17
USP28-201ENST00000003302 VCX2Q9H322 139 aa7.72□□□□□ -1.17
USP28-201ENST00000003302 I3L3M4 83 aa7.72□□□□□ -1.17
USP28-201ENST00000003302 TMEM141Q96I45 108 aa7.71□□□□□ -1.17
USP28-201ENST00000003302 TRBV7-9A0A0J9YWB2 115 aa7.71□□□□□ -1.18
USP28-201ENST00000003302 RPL32P62910 135 aaKnown RBP7.71□□□□□ -1.18
USP28-201ENST00000003302 C11orf72Q8NBR9 251 aa7.71□□□□□ -1.18
USP28-201ENST00000003302 TEN1Q86WV5 123 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 TRAV26-1A0A087WT03 109 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 UBE2D4Q9Y2X8 147 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 Q8N2B8 174 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 NTN5Q8WTR8 489 aaPredicted RBP7.7□□□□□ -1.18
USP28-201ENST00000003302 M0R2P5 195 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 SLC25A20O43772 301 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 HERVK_113P61574 105 aa7.7□□□□□ -1.18
USP28-201ENST00000003302 LEPROTO15243 131 aa7.69□□□□□ -1.18
USP28-201ENST00000003302 VPREB3Q9UKI3 123 aa7.69□□□□□ -1.18
USP28-201ENST00000003302 TMEM238LA0A1B0GVL6 79 aa7.69□□□□□ -1.18
USP28-201ENST00000003302 A6NJY4 79 aa7.69□□□□□ -1.18
USP28-201ENST00000003302 LOC100131303A0A0U1RQF7 123 aa7.69□□□□□ -1.18
USP28-201ENST00000003302 TRAV4A0A0B4J268 109 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 PPP1R17O96001 155 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 MRPS36P82909 103 aaKnown RBP7.68□□□□□ -1.18
USP28-201ENST00000003302 Q1RN00 199 aa7.68□□□□□ -1.18
USP28-201ENST00000003302 TIMM21Q9BVV7 248 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms