RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TMED4Q7Z7H5 227 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 STX12Q86Y82 276 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 MNS1Q8NEH6 495 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 BRK1Q8WUW1 75 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 VPS25Q9BRG1 176 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 CCDC32Q9BV29 185 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 TAS2R8Q9NYW2 309 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 TRAPPC2LQ9UL33 140 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 IBTKQ9P2D0 1353 aaPredicted RBP-0.37□□□□□ -2.47
VPS35-212ENST00000640313 A2MP01023 1474 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 BCL9LQ86UU0 1499 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 DNAJC13O75165 2243 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 PIK3C2AO00443 1686 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 PPRC1Q5VV67 1664 aaKnown RBP-0.37□□□□□ -2.47
VPS35-212ENST00000640313 UBR2Q8IWV8 1755 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 FASNP49327 2511 aaKnown RBP-0.37□□□□□ -2.47
VPS35-212ENST00000640313 PLXNA1Q9UIW2 1896 aa-0.37□□□□□ -2.47
VPS35-212ENST00000640313 C10orf71Q711Q0 1435 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 YTHDC2Q9H6S0 1430 aaKnown RBP-0.38□□□□□ -2.47
VPS35-212ENST00000640313 LAMC1P11047 1609 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 MYH2Q9UKX2 1941 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 TRANK1O15050 2925 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 DMXL1Q9Y485 3027 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 TRAV12-3A0A0B4J271 114 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 TRAV22A0A0B4J277 110 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 PNMA8CA0A1B0GUJ8 204 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 E7EQ34 232 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 CCDC179H3BU77 68 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 K7EQZ3 153 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 PITX3O75364 302 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 HLA-DRB4P13762 266 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 SERPINB1P30740 379 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 EDDM3BP56851 147 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 LSM3P62310 102 aaKnown RBP-0.38□□□□□ -2.47
VPS35-212ENST00000640313 RPS28P62857 69 aaKnown RBP-0.38□□□□□ -2.47
VPS35-212ENST00000640313 SPCS2Q15005 226 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 LINC01545Q5VT33 79 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 TMEM244Q5VVB8 128 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 C3orf33Q6P1S2 294 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 CYP2G1PQ6ZSU1 146 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 CROCCP2Q86T23 111 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 ATP6V0E2Q8NHE4 81 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 DYNLRB2Q8TF09 96 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 CCDC115Q96NT0 180 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 SLC35B3Q9H1N7 401 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 GID8Q9NWU2 228 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 SMPXQ9UHP9 88 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 NDUFA12Q9UI09 145 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 ERG28Q9UKR5 140 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 LSM2Q9Y333 95 aaKnown RBP-0.38□□□□□ -2.47
VPS35-212ENST00000640313 HLA-DRB4X5D2U9 266 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 ADGBQ8N7X0 1667 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 CASZ1Q86V15 1759 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 HELZP42694 1942 aaKnown RBP-0.38□□□□□ -2.47
VPS35-212ENST00000640313 AKAP11Q9UKA4 1901 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 CCDC171Q6TFL3 1326 aa-0.38□□□□□ -2.47
VPS35-212ENST00000640313 UHRF1BP1LA0JNW5 1464 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 SONP18583 2426 aaKnown RBP-0.39□□□□□ -2.47
VPS35-212ENST00000640313 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.39□□□□□ -2.47
VPS35-212ENST00000640313 ZZEF1O43149 2961 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 FAM107AO95990 144 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 HIST1H1BP16401 226 aaKnown RBP-0.39□□□□□ -2.47
VPS35-212ENST00000640313 UBE2D1P51668 147 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 PSPHP78330 225 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 TMEM128Q5BJH2 165 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 C9orf116Q5BN46 136 aaPredicted RBP-0.39□□□□□ -2.47
VPS35-212ENST00000640313 SPAG11AQ6PDA7 123 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 MYO7BQ6PIF6 2116 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 TOMM20LQ6UXN7 152 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 BAGE3Q86Y29 109 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 SNX29P2Q8IUI4 249 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 OR9Q1Q8NGQ5 310 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 CHMP6Q96FZ7 201 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 PCBD2Q9H0N5 130 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 LINC00472Q9H8W2 130 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 TP53AIP1Q9HCN2 124 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 SCP2D1Q9UJQ7 156 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 STOML2Q9UJZ1 356 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 NOP16Q9Y3C1 178 aaKnown RBP-0.39□□□□□ -2.47
VPS35-212ENST00000640313 WDR87Q6ZQQ6 2873 aa-0.39□□□□□ -2.47
VPS35-212ENST00000640313 MYH3P11055 1940 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 ROCK1Q13464 1354 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 SPG11Q96JI7 2443 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 TRBV20-1A0A075B6N2 111 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 TRAV1-2A0A0B4J238 106 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 A0A1B0GX51 115 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 J3KT08 172 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 M0R2T5 61 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 TNFSF15O95150 251 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 PAEPP09466 180 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 SCTP09683 121 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 G0S2P27469 103 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 GNG10P50151 68 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 CCL18P55774 89 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 UBE2G1P62253 170 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 TFAMQ00059 246 aaKnown RBP-0.4□□□□□ -2.47
VPS35-212ENST00000640313 CLLU1Q5K131 121 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 MIC13Q5XKP0 118 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 CDC26Q8NHZ8 85 aa-0.4□□□□□ -2.47
VPS35-212ENST00000640313 C10orf82Q8WW14 230 aa-0.4□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms