RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RAB4BP61018 213 aa10.48□□□□□ -0.73
CLN3-246ENST00000636228 CRPP02741 224 aa10.47□□□□□ -0.73
CLN3-246ENST00000636228 EIF5AP63241 154 aaKnown RBP10.47□□□□□ -0.73
CLN3-246ENST00000636228 CHCHD5Q9BSY4 110 aa10.47□□□□□ -0.73
CLN3-246ENST00000636228 SCO2A0A1W2PP80 73 aa10.46□□□□□ -0.73
CLN3-246ENST00000636228 USP17L23D6RBM5 183 aa10.46□□□□□ -0.73
CLN3-246ENST00000636228 HLA-DQA1P01909 254 aa10.46□□□□□ -0.73
CLN3-246ENST00000636228 PRR27Q6MZM9 219 aa10.46□□□□□ -0.73
CLN3-246ENST00000636228 SLC51BQ86UW2 128 aa10.46□□□□□ -0.73
CLN3-246ENST00000636228 F5H697 171 aa10.45□□□□□ -0.74
CLN3-246ENST00000636228 C14orf177Q52M58 125 aa10.45□□□□□ -0.74
CLN3-246ENST00000636228 CLPSL2Q6UWE3 100 aa10.45□□□□□ -0.74
CLN3-246ENST00000636228 NTM-AS1Q6ZSK4 140 aa10.45□□□□□ -0.74
CLN3-246ENST00000636228 SFT2D1Q8WV19 159 aa10.45□□□□□ -0.74
CLN3-246ENST00000636228 TCEAL7Q9BRU2 100 aa10.45□□□□□ -0.74
CLN3-246ENST00000636228 PRSS1P07477 247 aa10.44□□□□□ -0.74
CLN3-246ENST00000636228 SPANXN1Q5VSR9 72 aa10.44□□□□□ -0.74
CLN3-246ENST00000636228 BAGE2Q86Y30 109 aa10.44□□□□□ -0.74
CLN3-246ENST00000636228 UBR4Q5T4S7 5183 aa10.44□□□□□ -0.74
CLN3-246ENST00000636228 SNAI2O43623 268 aa10.43□□□□□ -0.74
CLN3-246ENST00000636228 HNRNPA3P51991 378 aaKnown RBP10.43□□□□□ -0.74
CLN3-246ENST00000636228 GAGE6Q13070 117 aa10.43□□□□□ -0.74
CLN3-246ENST00000636228 SERTAD4-AS1Q5TG53 156 aa10.43□□□□□ -0.74
CLN3-246ENST00000636228 FAM213BQ8TBF2 198 aa10.43□□□□□ -0.74
CLN3-246ENST00000636228 MLST8Q9BVC4 326 aa10.43□□□□□ -0.74
CLN3-246ENST00000636228 OXTP01178 125 aa10.42□□□□□ -0.74
CLN3-246ENST00000636228 RPL37AP61513 92 aaKnown RBP10.42□□□□□ -0.74
CLN3-246ENST00000636228 MBD3L1Q8WWY6 194 aa10.42□□□□□ -0.74
CLN3-246ENST00000636228 DERL1Q9BUN8 251 aa10.42□□□□□ -0.74
CLN3-246ENST00000636228 SSBP4Q9BWG4 385 aaPredicted RBP10.42□□□□□ -0.74
CLN3-246ENST00000636228 KIF25-AS1Q9Y6Z4 181 aa10.42□□□□□ -0.74
CLN3-246ENST00000636228 PANO1I0J062 215 aa10.41□□□□□ -0.74
CLN3-246ENST00000636228 S100A9P06702 114 aaKnown RBP10.41□□□□□ -0.74
CLN3-246ENST00000636228 RBX1P62877 108 aa10.41□□□□□ -0.74
CLN3-246ENST00000636228 KRTAP26-1Q6PEX3 210 aa10.41□□□□□ -0.74
CLN3-246ENST00000636228 LINC00269Q8N2A0 174 aa10.41□□□□□ -0.74
CLN3-246ENST00000636228 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.41□□□□□ -0.74
CLN3-246ENST00000636228 PKHD1L1Q86WI1 4243 aa10.41□□□□□ -0.74
CLN3-246ENST00000636228 UMAD1C9J7I0 102 aa10.4□□□□□ -0.74
CLN3-246ENST00000636228 CXCL1P09341 107 aa10.4□□□□□ -0.74
CLN3-246ENST00000636228 OR5AL1P0C617 328 aa10.4□□□□□ -0.74
CLN3-246ENST00000636228 MIAQ16674 131 aa10.4□□□□□ -0.74
CLN3-246ENST00000636228 EIF5AL1Q6IS14 154 aaKnown RBP10.4□□□□□ -0.74
CLN3-246ENST00000636228 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.4□□□□□ -0.74
CLN3-246ENST00000636228 DAZAP1Q96EP5 407 aaKnown RBP10.4□□□□□ -0.74
CLN3-246ENST00000636228 SMIM17P0DL12 118 aa10.39□□□□□ -0.75
CLN3-246ENST00000636228 GZMBP10144 247 aa10.39□□□□□ -0.75
CLN3-246ENST00000636228 C9orf163Q8N9P6 203 aa10.39□□□□□ -0.75
CLN3-246ENST00000636228 TPPP3Q9BW30 176 aa10.39□□□□□ -0.75
CLN3-246ENST00000636228 PRR34Q9NV39 138 aa10.39□□□□□ -0.75
CLN3-246ENST00000636228 VAX2Q9UIW0 290 aa10.39□□□□□ -0.75
CLN3-246ENST00000636228 IGLV10-54A0A075B6I4 117 aa10.38□□□□□ -0.75
CLN3-246ENST00000636228 DGAT2L7PQ6IED9 249 aa10.38□□□□□ -0.75
CLN3-246ENST00000636228 TRBV25-1A0A075B6N4 114 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 MGPP08493 103 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 RPL35P42766 123 aaKnown RBP10.37□□□□□ -0.75
CLN3-246ENST00000636228 SULT1A2P50226 295 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 RAB5CP51148 216 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 PKIAP61925 76 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 CCL20P78556 96 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 TMEM97Q5BJF2 176 aa10.37□□□□□ -0.75
CLN3-246ENST00000636228 H2AFB1P0C5Y9 115 aa10.36□□□□□ -0.75
CLN3-246ENST00000636228 ALKAL2Q6UX46 152 aa10.36□□□□□ -0.75
CLN3-246ENST00000636228 SDIM1Q6ZPB5 146 aa10.36□□□□□ -0.75
CLN3-246ENST00000636228 AP1S3Q96PC3 154 aa10.36□□□□□ -0.75
CLN3-246ENST00000636228 PLA2G2DQ9UNK4 145 aa10.36□□□□□ -0.75
CLN3-246ENST00000636228 IGHV1-24A0A0C4DH33 117 aa10.35□□□□□ -0.75
CLN3-246ENST00000636228 M0QY20 66 aa10.35□□□□□ -0.75
CLN3-246ENST00000636228 REG3AQ06141 175 aa10.35□□□□□ -0.75
CLN3-246ENST00000636228 IQCJQ1A5X6 159 aa10.34□□□□□ -0.75
CLN3-246ENST00000636228 SUMO4Q6EEV6 95 aa10.34□□□□□ -0.75
CLN3-246ENST00000636228 C20orf203Q8NBC4 194 aa10.34□□□□□ -0.75
CLN3-246ENST00000636228 GFRA4Q9GZZ7 299 aa10.34□□□□□ -0.75
CLN3-246ENST00000636228 GNG13Q9P2W3 67 aa10.34□□□□□ -0.75
CLN3-246ENST00000636228 IGLV4-60A0A075B6I1 120 aa10.33□□□□□ -0.76
CLN3-246ENST00000636228 IGLC6P0CF74 106 aa10.33□□□□□ -0.76
CLN3-246ENST00000636228 TEX261Q6UWH6 196 aa10.33□□□□□ -0.76
CLN3-246ENST00000636228 FER1L6-AS1Q8NA97 138 aa10.33□□□□□ -0.76
CLN3-246ENST00000636228 OR2D3Q8NGH3 330 aa10.33□□□□□ -0.76
CLN3-246ENST00000636228 hDV102S1A0JD36 115 aa10.32□□□□□ -0.76
CLN3-246ENST00000636228 RAB19A4D1S5 217 aa10.32□□□□□ -0.76
CLN3-246ENST00000636228 CENPWQ5EE01 88 aa10.32□□□□□ -0.76
CLN3-246ENST00000636228 TRAV1-1A0A0B4J248 108 aa10.31□□□□□ -0.76
CLN3-246ENST00000636228 SLPIP03973 132 aa10.31□□□□□ -0.76
CLN3-246ENST00000636228 CLRN3Q8NCR9 226 aa10.31□□□□□ -0.76
CLN3-246ENST00000636228 DPH3Q96FX2 82 aa10.31□□□□□ -0.76
CLN3-246ENST00000636228 C19orf71A6NCJ1 209 aa10.3□□□□□ -0.76
CLN3-246ENST00000636228 H7C1H1 209 aa10.3□□□□□ -0.76
CLN3-246ENST00000636228 CHTF8P0CG12 524 aa10.3□□□□□ -0.76
CLN3-246ENST00000636228 C11orf52Q96A22 123 aa10.3□□□□□ -0.76
CLN3-246ENST00000636228 TMEM243Q9BU79 118 aa10.3□□□□□ -0.76
CLN3-246ENST00000636228 CNBPP62633 177 aaKnown RBP10.29□□□□□ -0.76
CLN3-246ENST00000636228 RASL11AQ6T310 242 aa10.29□□□□□ -0.76
CLN3-246ENST00000636228 LYZL1Q6UWQ5 148 aa10.29□□□□□ -0.76
CLN3-246ENST00000636228 TRAV8-4A0A0B4J246 113 aa10.28□□□□□ -0.76
CLN3-246ENST00000636228 P01737 135 aa10.28□□□□□ -0.76
CLN3-246ENST00000636228 MT1HL1P0DM35 61 aa10.28□□□□□ -0.76
CLN3-246ENST00000636228 RPS20P60866 119 aaKnown RBP10.28□□□□□ -0.76
CLN3-246ENST00000636228 CACNG7P62955 275 aa10.28□□□□□ -0.76
CLN3-246ENST00000636228 BLOC1S1P78537 153 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms