RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NMUP48645 174 aa10.52□□□□□ -0.72
VRK3-217ENST00000599538 RPL32P62910 135 aaKnown RBP10.52□□□□□ -0.72
VRK3-217ENST00000599538 COL5A1-AS1Q5SY13 56 aa10.52□□□□□ -0.72
VRK3-217ENST00000599538 Q6ZVH6 145 aa10.52□□□□□ -0.72
VRK3-217ENST00000599538 TRPT1Q86TN4 253 aaKnown RBP10.52□□□□□ -0.72
VRK3-217ENST00000599538 GTSCR1Q86UQ5 136 aa10.52□□□□□ -0.72
VRK3-217ENST00000599538 C1orf158Q8N1D5 194 aa10.52□□□□□ -0.72
VRK3-217ENST00000599538 TRBV6-5A0A0K0K1A5 114 aa10.52□□□□□ -0.73
VRK3-217ENST00000599538 TRBV27A0A0K0K1C4 114 aa10.52□□□□□ -0.73
VRK3-217ENST00000599538 DPM2O94777 84 aa10.52□□□□□ -0.73
VRK3-217ENST00000599538 INSP01308 110 aa10.52□□□□□ -0.73
VRK3-217ENST00000599538 VCYO14598 125 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 TSHBP01222 138 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 IGLV1-51P01701 117 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 ZC2HC1BQ5TFG8 222 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 BOD1L2Q8IYS8 172 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 BAALCQ8WXS3 180 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 M0R2P5 195 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 ZNF415Q09FC8 603 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 UFSP1Q6NVU6 142 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 Q6ZSN1 163 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 NEXN-AS1Q8NBZ9 246 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 CLUHP3Q96NS8 147 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 MRPL16Q9NX20 251 aaKnown RBP10.51□□□□□ -0.73
VRK3-217ENST00000599538 TP53TG1Q9Y2A0 90 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 TENM1Q9UKZ4 2725 aa10.51□□□□□ -0.73
VRK3-217ENST00000599538 KIR2DL4Q99706 377 aa10.5□□□□□ -0.73
VRK3-217ENST00000599538 C19orf73Q9NVV2 129 aa10.5□□□□□ -0.73
VRK3-217ENST00000599538 GIG44P09565 113 aaPredicted RBP10.49□□□□□ -0.73
VRK3-217ENST00000599538 G0S2P27469 103 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 BVES-AS1Q5T3Y7 98 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 ERASQ7Z444 233 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 JMJD8Q96S16 334 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 SPATA3Q8NHX4 192 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 TMEM208Q9BTX3 173 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 CYSLTR1Q9Y271 337 aa10.49□□□□□ -0.73
VRK3-217ENST00000599538 TRAV12-1A0A0B4J245 112 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 IGIPA6NJ69 53 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 F8VRH5 84 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 CFAP126Q5VTH2 177 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 LINC00467Q9BRT7 94 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 PRSS29PA6NIE9 313 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 H7C1H1 209 aa10.48□□□□□ -0.73
VRK3-217ENST00000599538 ZNF25P17030 456 aaPredicted RBP10.48□□□□□ -0.73
VRK3-217ENST00000599538 CHTOPQ9Y3Y2 248 aaKnown RBP10.48□□□□□ -0.73
VRK3-217ENST00000599538 BEAN1Q3B7T3 259 aa10.47□□□□□ -0.73
VRK3-217ENST00000599538 RPL35AP18077 110 aaKnown RBP10.46□□□□□ -0.73
VRK3-217ENST00000599538 RIPPLY3P57055 190 aa10.46□□□□□ -0.73
VRK3-217ENST00000599538 A8MWV9 139 aa10.46□□□□□ -0.74
VRK3-217ENST00000599538 EMP1P54849 157 aa10.46□□□□□ -0.74
VRK3-217ENST00000599538 NDUFA11Q86Y39 141 aa10.46□□□□□ -0.74
VRK3-217ENST00000599538 OPRPNQ99935 248 aaPredicted RBP10.46□□□□□ -0.74
VRK3-217ENST00000599538 PLNP26678 52 aa10.45□□□□□ -0.74
VRK3-217ENST00000599538 MAPKAPK5-AS1Q8N8E1 139 aa10.45□□□□□ -0.74
VRK3-217ENST00000599538 RNASE8Q8TDE3 154 aaKnown RBP10.45□□□□□ -0.74
VRK3-217ENST00000599538 DLEU1O43261 78 aa10.44□□□□□ -0.74
VRK3-217ENST00000599538 C12orf54Q6X4T0 127 aa10.44□□□□□ -0.74
VRK3-217ENST00000599538 LINC00482Q8N8I6 264 aa10.44□□□□□ -0.74
VRK3-217ENST00000599538 PTH2Q96A98 100 aa10.44□□□□□ -0.74
VRK3-217ENST00000599538 SPXQ9BT56 116 aa10.44□□□□□ -0.74
VRK3-217ENST00000599538 I3L3M4 83 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 PF4P02776 101 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 PIK3CD-AS1Q5SR53 167 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 IL17DQ8TAD2 202 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 EDA2RQ9HAV5 297 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 FLNBO75369 2602 aaKnown RBP10.43□□□□□ -0.74
VRK3-217ENST00000599538 ATRQ13535 2644 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 IGLV4-69A0A075B6H9 119 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 TRAV8-6A0A0B4J262 113 aa10.43□□□□□ -0.74
VRK3-217ENST00000599538 TMEM97Q5BJF2 176 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 TRGV1A0A0A0MS02 117 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 RS1O15537 224 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 RHOHQ15669 191 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 Q6ZTI0 123 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 C20orf203Q8NBC4 194 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 TIMM17AQ99595 171 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 CST9LQ9H4G1 147 aa10.42□□□□□ -0.74
VRK3-217ENST00000599538 C11orf86A6NJI1 115 aa10.41□□□□□ -0.74
VRK3-217ENST00000599538 FAM110AQ9BQ89 295 aa10.41□□□□□ -0.74
VRK3-217ENST00000599538 TNFRSF18Q9Y5U5 241 aa10.41□□□□□ -0.74
VRK3-217ENST00000599538 TRBV25-1A0A075B6N4 114 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 IGHV3-38A0A0C4DH36 116 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 TAX1BP3O14907 124 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 SIVA1O15304 175 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 IGHV3-53P01767 116 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 PMVKQ15126 192 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 CSNK1G2-AS1Q8NCQ2 148 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 ZNF479Q96JC4 524 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 PLAC8L1A1L4L8 177 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 NPSP0C0P6 89 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 CMC4P56277 68 aaPredicted RBP10.4□□□□□ -0.74
VRK3-217ENST00000599538 TMEM141Q96I45 108 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 COX11Q9Y6N1 276 aa10.4□□□□□ -0.74
VRK3-217ENST00000599538 F8P00451 2351 aa10.39□□□□□ -0.75
VRK3-217ENST00000599538 CEMP1Q6PRD7 247 aaPredicted RBP10.39□□□□□ -0.75
VRK3-217ENST00000599538 TMEM263Q8WUH6 116 aaKnown RBP10.39□□□□□ -0.75
VRK3-217ENST00000599538 PHLDA1Q8WV24 401 aaPredicted RBP10.39□□□□□ -0.75
VRK3-217ENST00000599538 FAM104AQ969W3 186 aa10.39□□□□□ -0.75
VRK3-217ENST00000599538 NOP10Q9NPE3 64 aaKnown RBP10.39□□□□□ -0.75
VRK3-217ENST00000599538 K7EP13 123 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms