RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ZNF56Q15929 161 aa12.4□□□□□ -0.42
SHKBP1-216ENST00000598201 C1orf158Q8N1D5 194 aa12.4□□□□□ -0.42
SHKBP1-216ENST00000598201 LINC00482Q8N8I6 264 aa12.4□□□□□ -0.42
SHKBP1-216ENST00000598201 C11orf72Q8NBR9 251 aa12.4□□□□□ -0.42
SHKBP1-216ENST00000598201 LINC00467Q9BRT7 94 aa12.4□□□□□ -0.42
SHKBP1-216ENST00000598201 M0QY20 66 aa12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 PF4P02776 101 aa12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 MORN3Q6PF18 240 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 ST20Q9HBF5 79 aa12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 DKK2Q9UBU2 259 aa12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 TP73-AS1Q9UF72 201 aa12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 POLR2KP53803 58 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 DEFB104AQ8WTQ1 72 aa12.39□□□□□ -0.43
SHKBP1-216ENST00000598201 AZU1P20160 251 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 ZNF415Q09FC8 603 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 ORMDL2Q53FV1 153 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 Q6ZN92 141 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 M0R2P5 195 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 PTTG1IPP53801 180 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 SPATA3Q8NHX4 192 aa12.38□□□□□ -0.43
SHKBP1-216ENST00000598201 IGHV3OR16-12A0A075B7B8 117 aa12.37□□□□□ -0.43
SHKBP1-216ENST00000598201 PRSS1P07477 247 aa12.37□□□□□ -0.43
SHKBP1-216ENST00000598201 GIG44P09565 113 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-216ENST00000598201 RPL32P62910 135 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-216ENST00000598201 IGHV3-73A0A0B4J1V6 119 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 CMC4P56277 68 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 ODF1Q14990 250 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 FAM110AQ9BQ89 295 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 TRBV6-5A0A0K0K1A5 114 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 SDHAF1A6NFY7 115 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 K7EMI3 77 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 CCL25O15444 150 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 ATP5LO75964 103 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 TOMM6Q96B49 74 aa12.36□□□□□ -0.43
SHKBP1-216ENST00000598201 UBE2V1Q13404 147 aa12.35□□□□□ -0.43
SHKBP1-216ENST00000598201 UFSP1Q6NVU6 142 aa12.35□□□□□ -0.43
SHKBP1-216ENST00000598201 VWFP04275 2813 aa12.35□□□□□ -0.43
SHKBP1-216ENST00000598201 RPL35AP18077 110 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-216ENST00000598201 HNRNPA3P51991 378 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-216ENST00000598201 STPG4Q8N801 248 aa12.34□□□□□ -0.43
SHKBP1-216ENST00000598201 MRPL16Q9NX20 251 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-216ENST00000598201 VCYO14598 125 aa12.34□□□□□ -0.43
SHKBP1-216ENST00000598201 C2orf66Q6UXQ4 117 aa12.34□□□□□ -0.43
SHKBP1-216ENST00000598201 TRBV27A0A0K0K1C4 114 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 PTH2Q96A98 100 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 NOTCH3Q9UM47 2321 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 NACAE9PAV3 2078 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 TMEM238C9JI98 176 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 TCTAP57738 103 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 PIK3CD-AS1Q5SR53 167 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 ZFP2Q6ZN57 461 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 SCGB3A1Q96QR1 104 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 SPXQ9BT56 116 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 ZMAT4Q9H898 229 aa12.33□□□□□ -0.44
SHKBP1-216ENST00000598201 A8MWV9 139 aa12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 P0DMU3 169 aa12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 FAM231AP0DMU4 169 aa12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 FAM231CP0DMU5 169 aa12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 CFAP126Q5VTH2 177 aa12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 Q6ZSN1 163 aa12.32□□□□□ -0.44
SHKBP1-216ENST00000598201 IL17DQ8TAD2 202 aa12.31□□□□□ -0.44
SHKBP1-216ENST00000598201 KIR2DL4Q99706 377 aa12.31□□□□□ -0.44
SHKBP1-216ENST00000598201 Q9UF83 564 aa12.31□□□□□ -0.44
SHKBP1-216ENST00000598201 ANK2Q01484 3957 aa12.3□□□□□ -0.44
SHKBP1-216ENST00000598201 MRPL35Q9NZE8 188 aaKnown RBP12.3□□□□□ -0.44
SHKBP1-216ENST00000598201 SLC25A34Q6PIV7 304 aa12.3□□□□□ -0.44
SHKBP1-216ENST00000598201 EDA2RQ9HAV5 297 aa12.3□□□□□ -0.44
SHKBP1-216ENST00000598201 HHLA3Q9XRX5 114 aa12.3□□□□□ -0.44
SHKBP1-216ENST00000598201 A0A087WX48 190 aa12.29□□□□□ -0.44
SHKBP1-216ENST00000598201 RPL39P62891 51 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-216ENST00000598201 BATFQ16520 125 aa12.29□□□□□ -0.44
SHKBP1-216ENST00000598201 TP53TG1Q9Y2A0 90 aa12.29□□□□□ -0.44
SHKBP1-216ENST00000598201 MRPS16Q9Y3D3 137 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-216ENST00000598201 IGKCP01834 107 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 COX8AP10176 69 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 CSNK1G2-AS1Q8NCQ2 148 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 CYSLTR1Q9Y271 337 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 TRRAPQ9Y4A5 3859 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 RS1O15537 224 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 TSHBP01222 138 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 ERASQ7Z444 233 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 NEXN-AS1Q8NBZ9 246 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 BAALCQ8WXS3 180 aa12.28□□□□□ -0.44
SHKBP1-216ENST00000598201 H7C1H1 209 aa12.27□□□□□ -0.45
SHKBP1-216ENST00000598201 DPM2O94777 84 aa12.27□□□□□ -0.45
SHKBP1-216ENST00000598201 RNF151Q2KHN1 245 aa12.27□□□□□ -0.45
SHKBP1-216ENST00000598201 TMEM263Q8WUH6 116 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-216ENST00000598201 TRAV12-1A0A0B4J245 112 aa12.26□□□□□ -0.45
SHKBP1-216ENST00000598201 FGF6P10767 208 aa12.26□□□□□ -0.45
SHKBP1-216ENST00000598201 VPS25Q9BRG1 176 aa12.26□□□□□ -0.45
SHKBP1-216ENST00000598201 TRGV1A0A0A0MS02 117 aa12.26□□□□□ -0.45
SHKBP1-216ENST00000598201 IGIPA6NJ69 53 aa12.26□□□□□ -0.45
SHKBP1-216ENST00000598201 COX11Q9Y6N1 276 aa12.26□□□□□ -0.45
SHKBP1-216ENST00000598201 I3L3M4 83 aa12.25□□□□□ -0.45
SHKBP1-216ENST00000598201 Q6ZTI0 123 aa12.25□□□□□ -0.45
SHKBP1-216ENST00000598201 PLAC8L1A1L4L8 177 aa12.25□□□□□ -0.45
SHKBP1-216ENST00000598201 RHODO00212 210 aa12.25□□□□□ -0.45
SHKBP1-216ENST00000598201 INSL3P51460 131 aa12.25□□□□□ -0.45
SHKBP1-216ENST00000598201 C9orf66Q5T8R8 295 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms