RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 FAM231CP0DMU5 169 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 HOXA5P20719 270 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 IQCJQ1A5X6 159 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 SLC25A29Q8N8R3 303 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 MAP1LC3AQ9H492 121 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 NANOS2P60321 138 aaKnown RBP10.33□□□□□ -0.76
VRK3-212ENST00000596814 RHOHQ15669 191 aa10.33□□□□□ -0.76
VRK3-212ENST00000596814 Q6ZTC4 211 aa10.33□□□□□ -0.76
VRK3-212ENST00000596814 NIT2Q9NQR4 276 aa10.33□□□□□ -0.76
VRK3-212ENST00000596814 HTN3P15516 51 aa10.33□□□□□ -0.76
VRK3-212ENST00000596814 SUMO2P61956 95 aaKnown RBP10.33□□□□□ -0.76
VRK3-212ENST00000596814 Q0VG73 95 aa10.33□□□□□ -0.76
VRK3-212ENST00000596814 HHLA3Q9XRX5 114 aa10.33□□□□□ -0.76
VRK3-212ENST00000596814 TRBV10-1A0A0K0K1A3 114 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 TRBV6-5A0A0K0K1A5 114 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 LOC389332A0A1B0GUA5 103 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 F5H768 121 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 NEXN-AS1Q8NBZ9 246 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 C20orf78Q9BR46 151 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 PRADC1Q9BSG0 188 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 ST20Q9HBF5 79 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 PRO0255Q9UI72 69 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 COL7A1Q02388 2944 aa10.32□□□□□ -0.76
VRK3-212ENST00000596814 CRYBA4P53673 196 aa10.31□□□□□ -0.76
VRK3-212ENST00000596814 BAGE3Q86Y29 109 aa10.31□□□□□ -0.76
VRK3-212ENST00000596814 DNAJC30Q96LL9 226 aa10.31□□□□□ -0.76
VRK3-212ENST00000596814 Q9UF83 564 aa10.31□□□□□ -0.76
VRK3-212ENST00000596814 TNFRSF18Q9Y5U5 241 aa10.31□□□□□ -0.76
VRK3-212ENST00000596814 NDUFA6P56556 154 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 SMIM2Q9BVW6 85 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 SDHAF1A6NFY7 115 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 PRSS47A8MTI9 375 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 S100A6P06703 90 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 PMCHP20382 165 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 RPL36AP83881 106 aaKnown RBP10.3□□□□□ -0.76
VRK3-212ENST00000596814 PRSS3P2Q8NHM4 247 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 RPL36ALQ969Q0 106 aaKnown RBP10.3□□□□□ -0.76
VRK3-212ENST00000596814 TMEM70Q9BUB7 260 aa10.3□□□□□ -0.76
VRK3-212ENST00000596814 STAB2Q8WWQ8 2551 aa10.29□□□□□ -0.76
VRK3-212ENST00000596814 LOC100131303A0A0U1RQF7 123 aa10.29□□□□□ -0.76
VRK3-212ENST00000596814 PAX4O43316 350 aa10.29□□□□□ -0.76
VRK3-212ENST00000596814 IFI27P40305 119 aaPredicted RBP10.29□□□□□ -0.76
VRK3-212ENST00000596814 RPL32P62910 135 aaKnown RBP10.29□□□□□ -0.76
VRK3-212ENST00000596814 NXT2Q9NPJ8 142 aaKnown RBP10.29□□□□□ -0.76
VRK3-212ENST00000596814 TRBV7-3A0A075B6L6 115 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 GAGE12JA6NER3 117 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 POLR2KP53803 58 aaKnown RBP10.28□□□□□ -0.76
VRK3-212ENST00000596814 GAGE1Q13065 139 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 GAGE4Q13068 117 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 GAGE5Q13069 117 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 GAGE13Q4V321 117 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 FA2HQ7L5A8 372 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 ZNRF2Q8NHG8 242 aa10.28□□□□□ -0.76
VRK3-212ENST00000596814 IGLV2-18A0A075B6J9 118 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 TRAV26-1A0A087WT03 109 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 A0A0J9YY99 117 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 SERF1AO75920 110 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 GYPEP15421 78 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 COA6Q5JTJ3 125 aaKnown RBP10.27□□□□□ -0.76
VRK3-212ENST00000596814 RNASEKQ6P5S7 137 aaKnown RBP10.27□□□□□ -0.76
VRK3-212ENST00000596814 NEGR1Q7Z3B1 354 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 NIT1Q86X76 327 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 Q8N8P6 123 aa10.27□□□□□ -0.76
VRK3-212ENST00000596814 FBN3Q75N90 2809 aa10.27□□□□□ -0.77
VRK3-212ENST00000596814 DEFB131BA0A096LNP1 70 aa10.27□□□□□ -0.77
VRK3-212ENST00000596814 LINC00310P59036 64 aa10.27□□□□□ -0.77
VRK3-212ENST00000596814 URB1-AS1Q96HZ7 61 aa10.27□□□□□ -0.77
VRK3-212ENST00000596814 VSIG2Q96IQ7 327 aa10.27□□□□□ -0.77
VRK3-212ENST00000596814 TRAV10A0A0B4J240 114 aa10.26□□□□□ -0.77
VRK3-212ENST00000596814 TRBV27A0A0K0K1C4 114 aa10.26□□□□□ -0.77
VRK3-212ENST00000596814 VCYO14598 125 aa10.26□□□□□ -0.77
VRK3-212ENST00000596814 LINC00614P0C842 121 aa10.26□□□□□ -0.77
VRK3-212ENST00000596814 UBE2D3P61077 147 aa10.26□□□□□ -0.77
VRK3-212ENST00000596814 UBE2D2P62837 147 aa10.26□□□□□ -0.77
VRK3-212ENST00000596814 CHCHD1Q96BP2 118 aaKnown RBP10.26□□□□□ -0.77
VRK3-212ENST00000596814 I3L3M4 83 aa10.25□□□□□ -0.77
VRK3-212ENST00000596814 LINC00694P0DN24 101 aa10.25□□□□□ -0.77
VRK3-212ENST00000596814 PHLDA1Q8WV24 401 aaPredicted RBP10.25□□□□□ -0.77
VRK3-212ENST00000596814 KIR2DL4Q99706 377 aa10.25□□□□□ -0.77
VRK3-212ENST00000596814 AP5S1Q9NUS5 200 aa10.25□□□□□ -0.77
VRK3-212ENST00000596814 IGHV3-38A0A0C4DH36 116 aa10.24□□□□□ -0.77
VRK3-212ENST00000596814 LINC01546A6NGU7 62 aa10.24□□□□□ -0.77
VRK3-212ENST00000596814 TCAPO15273 167 aa10.24□□□□□ -0.77
VRK3-212ENST00000596814 HSBP1O75506 76 aa10.24□□□□□ -0.77
VRK3-212ENST00000596814 DAZ4Q86SG3 579 aaKnown RBP10.24□□□□□ -0.77
VRK3-212ENST00000596814 DAZ3Q9NR90 486 aaKnown RBP10.24□□□□□ -0.77
VRK3-212ENST00000596814 K7EMI3 77 aa10.23□□□□□ -0.77
VRK3-212ENST00000596814 NUPR1O60356 82 aa10.23□□□□□ -0.77
VRK3-212ENST00000596814 FCER1GP30273 86 aa10.23□□□□□ -0.77
VRK3-212ENST00000596814 SNRPEP62304 92 aaKnown RBP10.23□□□□□ -0.77
VRK3-212ENST00000596814 ICOSQ9Y6W8 199 aa10.23□□□□□ -0.77
VRK3-212ENST00000596814 C5orf52A6NGY3 159 aa10.22□□□□□ -0.77
VRK3-212ENST00000596814 H3BNG1 76 aa10.22□□□□□ -0.77
VRK3-212ENST00000596814 TSHBP01222 138 aa10.22□□□□□ -0.77
VRK3-212ENST00000596814 ESDP10768 282 aa10.22□□□□□ -0.77
VRK3-212ENST00000596814 LAGE3Q14657 143 aa10.22□□□□□ -0.77
VRK3-212ENST00000596814 DEFB104AQ8WTQ1 72 aa10.22□□□□□ -0.77
VRK3-212ENST00000596814 COTL1Q14019 142 aa10.21□□□□□ -0.77
VRK3-212ENST00000596814 MRPL23Q16540 153 aaKnown RBP10.21□□□□□ -0.77
VRK3-212ENST00000596814 ORMDL2Q53FV1 153 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms