RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 ELOBQ15370 118 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 Q8N1X5 172 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 Q8N814 137 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 CHCHD7Q9BUK0 85 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 KRTAP4-5Q9BYR2 181 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 COX11Q9Y6N1 276 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 KIF25-AS1Q9Y6Z4 181 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 IGLV5-52A0A0A0MRZ9 124 aa10.17□□□□□ -0.78
TRIM28-203ENST00000593582 TRBV6-8A0A0A6YYG3 113 aa10.17□□□□□ -0.78
TRIM28-203ENST00000593582 RMI2Q96E14 147 aa10.17□□□□□ -0.78
TRIM28-203ENST00000593582 TMEM262E9PQX1 116 aa10.16□□□□□ -0.78
TRIM28-203ENST00000593582 KRTAP10-1P60331 282 aa10.16□□□□□ -0.78
TRIM28-203ENST00000593582 NUDT10Q8NFP7 164 aa10.16□□□□□ -0.78
TRIM28-203ENST00000593582 NUDT11Q96G61 164 aa10.16□□□□□ -0.78
TRIM28-203ENST00000593582 KLK12Q9UKR0 248 aa10.16□□□□□ -0.78
TRIM28-203ENST00000593582 H7C1H1 209 aa10.15□□□□□ -0.78
TRIM28-203ENST00000593582 MGPP08493 103 aa10.15□□□□□ -0.78
TRIM28-203ENST00000593582 TMEM97Q5BJF2 176 aa10.15□□□□□ -0.78
TRIM28-203ENST00000593582 LYZL1Q6UWQ5 148 aa10.15□□□□□ -0.78
TRIM28-203ENST00000593582 ABCA13Q86UQ4 5058 aa10.15□□□□□ -0.79
TRIM28-203ENST00000593582 TMEM250H0YL14 139 aa10.14□□□□□ -0.79
TRIM28-203ENST00000593582 TRGC1P0CF51 173 aa10.14□□□□□ -0.79
TRIM28-203ENST00000593582 PKIAP61925 76 aa10.14□□□□□ -0.79
TRIM28-203ENST00000593582 LYPD6BQ8NI32 183 aa10.14□□□□□ -0.79
TRIM28-203ENST00000593582 OCC1Q8TAD7 63 aa10.14□□□□□ -0.79
TRIM28-203ENST00000593582 UBE2WQ96B02 151 aa10.14□□□□□ -0.79
TRIM28-203ENST00000593582 RPP21Q9H633 154 aaKnown RBP10.14□□□□□ -0.79
TRIM28-203ENST00000593582 IGKV2D-24A0A075B6R9 120 aa10.13□□□□□ -0.79
TRIM28-203ENST00000593582 K7EN84 100 aa10.13□□□□□ -0.79
TRIM28-203ENST00000593582 M0QY20 66 aa10.13□□□□□ -0.79
TRIM28-203ENST00000593582 CTRLP40313 264 aa10.13□□□□□ -0.79
TRIM28-203ENST00000593582 NKX2-5P52952 324 aaPredicted RBP10.13□□□□□ -0.79
TRIM28-203ENST00000593582 DNAJC30Q96LL9 226 aa10.13□□□□□ -0.79
TRIM28-203ENST00000593582 CHCHD5Q9BSY4 110 aa10.13□□□□□ -0.79
TRIM28-203ENST00000593582 RNASE7Q9H1E1 156 aaKnown RBP10.13□□□□□ -0.79
TRIM28-203ENST00000593582 LECT2O14960 151 aa10.12□□□□□ -0.79
TRIM28-203ENST00000593582 NTF3P20783 257 aa10.12□□□□□ -0.79
TRIM28-203ENST00000593582 XGP55808 180 aa10.12□□□□□ -0.79
TRIM28-203ENST00000593582 Q0VG73 95 aa10.12□□□□□ -0.79
TRIM28-203ENST00000593582 SUMO4Q6EEV6 95 aa10.12□□□□□ -0.79
TRIM28-203ENST00000593582 WDR73Q6P4I2 378 aa10.12□□□□□ -0.79
TRIM28-203ENST00000593582 CEBPGP53567 150 aa10.11□□□□□ -0.79
TRIM28-203ENST00000593582 WFDC2Q14508 124 aa10.11□□□□□ -0.79
TRIM28-203ENST00000593582 TWIST1Q15672 202 aa10.11□□□□□ -0.79
TRIM28-203ENST00000593582 MPV17L2Q567V2 206 aa10.11□□□□□ -0.79
TRIM28-203ENST00000593582 EIF5A2Q9GZV4 153 aaKnown RBP10.11□□□□□ -0.79
TRIM28-203ENST00000593582 DPH3P1Q9H4G8 78 aa10.11□□□□□ -0.79
TRIM28-203ENST00000593582 TRBV25-1A0A075B6N4 114 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 A0A1B0GVG6 124 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 CRPP02741 224 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 ANGP03950 147 aaKnown RBP10.1□□□□□ -0.79
TRIM28-203ENST00000593582 RASL11AQ6T310 242 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 NTM-AS1Q6ZSK4 140 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 C15orf54Q8N8G6 183 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 BAALCQ8WXS3 180 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 CNFNQ9BYD5 112 aa10.1□□□□□ -0.79
TRIM28-203ENST00000593582 EPM2AB3EWF7 344 aa10.09□□□□□ -0.79
TRIM28-203ENST00000593582 ATRAIDQ6UW56 229 aa10.09□□□□□ -0.79
TRIM28-203ENST00000593582 C1orf43Q9BWL3 253 aa10.09□□□□□ -0.79
TRIM28-203ENST00000593582 IGHV1-24A0A0C4DH33 117 aa10.08□□□□□ -0.8
TRIM28-203ENST00000593582 GATCO43716 136 aaKnown RBP10.08□□□□□ -0.8
TRIM28-203ENST00000593582 IQCJQ1A5X6 159 aa10.08□□□□□ -0.8
TRIM28-203ENST00000593582 FAM231DQ6ZW35 169 aa10.08□□□□□ -0.8
TRIM28-203ENST00000593582 Q8N976 141 aa10.08□□□□□ -0.8
TRIM28-203ENST00000593582 TMEM70Q9BUB7 260 aa10.08□□□□□ -0.8
TRIM28-203ENST00000593582 NIT2Q9NQR4 276 aa10.08□□□□□ -0.8
TRIM28-203ENST00000593582 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-203ENST00000593582 NDUFS6O75380 124 aaKnown RBP10.07□□□□□ -0.8
TRIM28-203ENST00000593582 GAGE6Q13070 117 aa10.07□□□□□ -0.8
TRIM28-203ENST00000593582 ENHOQ6UWT2 76 aa10.07□□□□□ -0.8
TRIM28-203ENST00000593582 SMIM15Q7Z3B0 74 aa10.07□□□□□ -0.8
TRIM28-203ENST00000593582 GTSF1Q8WW33 167 aa10.07□□□□□ -0.8
TRIM28-203ENST00000593582 FAM210AQ96ND0 272 aa10.07□□□□□ -0.8
TRIM28-203ENST00000593582 SMIM7Q9BQ49 75 aa10.07□□□□□ -0.8
TRIM28-203ENST00000593582 A8MWL6 223 aa10.06□□□□□ -0.8
TRIM28-203ENST00000593582 RBX1P62877 108 aa10.06□□□□□ -0.8
TRIM28-203ENST00000593582 FRZBQ92765 325 aa10.06□□□□□ -0.8
TRIM28-203ENST00000593582 MIAQ16674 131 aa10.05□□□□□ -0.8
TRIM28-203ENST00000593582 ZNF727A8MUV8 499 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 CT83Q5H943 113 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 LINC01551Q86U37 167 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 LINC00269Q8N2A0 174 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 PGLYRP4Q96LB8 373 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 TMEM243Q9BU79 118 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 FAT1Q14517 4588 aa10.04□□□□□ -0.8
TRIM28-203ENST00000593582 TRAV26-2A0A0B4J265 109 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 SMR3BP02814 79 aaPredicted RBP10.03□□□□□ -0.8
TRIM28-203ENST00000593582 HAMPP81172 84 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 COTL1Q14019 142 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 C14orf177Q52M58 125 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 Q5VSD8 79 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 CLPSL2Q6UWE3 100 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 GATD1Q8NB37 220 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 BORCS7Q96B45 105 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 PRR34Q9NV39 138 aa10.03□□□□□ -0.8
TRIM28-203ENST00000593582 UBE2L6O14933 153 aa10.02□□□□□ -0.81
TRIM28-203ENST00000593582 SRP19P09132 144 aaKnown RBP10.02□□□□□ -0.81
TRIM28-203ENST00000593582 FOXA3P55318 350 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-203ENST00000593582 TEX261Q6UWH6 196 aa10.02□□□□□ -0.81
TRIM28-203ENST00000593582 FAM30AQ9NZY2 134 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms