RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GPR82Q96P67 336 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 KRTAP4-8Q9BYQ9 185 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 LINC00588Q9Y4M8 146 aa4.68□□□□□ -1.66
VPS53-213ENST00000572334 A0A1B0GW15 77 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 PRAC2D3DTV9 90 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 TMEM262E9PQX1 116 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 F5H768 121 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 SYS1-DBNDD2H3BUS1 97 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 NUPR1O60356 82 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 CT45A10P0DMU9 189 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 RPL7P18124 248 aaKnown RBP4.67□□□□□ -1.66
VPS53-213ENST00000572334 IBA57Q5T440 356 aaKnown RBP4.67□□□□□ -1.66
VPS53-213ENST00000572334 XP32Q5T750 250 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 SPATA12Q7Z6I5 190 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 NHLRC2Q8NBF2 726 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 OCC1Q8TAD7 63 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 GEMIN7Q9H840 131 aaKnown RBP4.67□□□□□ -1.66
VPS53-213ENST00000572334 SCRT2Q9NQ03 307 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 TP53TG3Q9ULZ0 132 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 HIGD1AQ9Y241 93 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 WDR83OSQ9Y284 106 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 SPCS1Q9Y6A9 102 aa4.67□□□□□ -1.66
VPS53-213ENST00000572334 VPS13BQ7Z7G8 4022 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 MUC21A0A0G2JKD1 596 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 MUC21A0A140T8X8 626 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 A0A1W2PPM0 123 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 FAM231BA6NCW3 169 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 ATP5G1P05496 136 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 ATP5G3P48201 142 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 CT83Q5H943 113 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 MUC21Q5SSG8 566 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 RNASEKQ6P5S7 137 aaKnown RBP4.66□□□□□ -1.66
VPS53-213ENST00000572334 C6orf223Q8N319 242 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 ATP6V0E2Q8NHE4 81 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 LINC01587Q99440 93 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 MGST2Q99735 147 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 NPVFQ9HCQ7 196 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 NOP10Q9NPE3 64 aaKnown RBP4.66□□□□□ -1.66
VPS53-213ENST00000572334 V9GYV3 84 aa4.66□□□□□ -1.66
VPS53-213ENST00000572334 A0A1W2PRE2 83 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 C16orf90A8MZG2 172 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 H3BTX0 84 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 CDK2AP2O75956 126 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 S100A7P31151 101 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 LINC00310P59036 64 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 GAGE5Q13069 117 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 GAGE6Q13070 117 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 TAL2Q16559 108 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 TEPPQ6URK8 271 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 TMEM263Q8WUH6 116 aaKnown RBP4.65□□□□□ -1.67
VPS53-213ENST00000572334 C16orf74Q96GX8 76 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 MRPL32Q9BYC8 188 aaKnown RBP4.65□□□□□ -1.67
VPS53-213ENST00000572334 GFRA4Q9GZZ7 299 aa4.65□□□□□ -1.67
VPS53-213ENST00000572334 TIMM8BQ9Y5J9 83 aaPredicted RBP4.65□□□□□ -1.67
VPS53-213ENST00000572334 FAT1Q14517 4588 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 TRAV5A0A0B4J249 113 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 A8MWL6 223 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.64□□□□□ -1.67
VPS53-213ENST00000572334 J3QL48 77 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 ARL14EPLP0DKL9 152 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 HTN1P15515 57 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 GCHFRP30047 84 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 CRYBA4P53673 196 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 CCL18P55774 89 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 KRTAP10-2P60368 255 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 HBBP68871 147 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 SMAGPQ0VAQ4 97 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 SLAQ13239 276 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 ESRGQ1W209 222 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 Q6AWC8 147 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 ZNF493Q6ZR52 646 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 LINC00305Q7Z4B0 112 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 ZNF479Q96JC4 524 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 SPXQ9BT56 116 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 NDFIP1Q9BT67 221 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 UPK3BQ9BT76 320 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 Q9H8V8 135 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 HIGD1BQ9P298 99 aa4.64□□□□□ -1.67
VPS53-213ENST00000572334 TRAV26-1A0A087WT03 109 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 TRAV8-6A0A0B4J262 113 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 SCO2A0A1W2PP80 73 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 H3BUT2 72 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 J3KRW8 73 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 TSPAN13O95857 204 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 CENPWQ5EE01 88 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 LINC01545Q5VT33 79 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 Q6ZRN7 208 aaPredicted RBP4.63□□□□□ -1.67
VPS53-213ENST00000572334 MAPKAPK5-AS1Q8N8E1 139 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 C11orf72Q8NBR9 251 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 ZNF503Q96F45 646 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 VSIG2Q96IQ7 327 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 FAM19A4Q96LR4 140 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 VGLL1Q99990 258 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 SLC50A1Q9BRV3 221 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 Q9H3A6 140 aa4.63□□□□□ -1.67
VPS53-213ENST00000572334 A0A096LPF7 62 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 A0A0J9YY99 117 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 PGPEP1LA6NFU8 196 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 NPIPB6E9PJ23 425 aa4.62□□□□□ -1.67
VPS53-213ENST00000572334 GAGE7O76087 117 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 152.8 ms