RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 JMJD8Q96S16 334 aa14.79□□□□□ -0.04
CLN3-230ENST00000568076 HILS1P60008 231 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 SEC11AP67812 179 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 UFSP1Q6NVU6 142 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 MAPKAPK5-AS1Q8N8E1 139 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 C11orf72Q8NBR9 251 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 LINC01587Q99440 93 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 IGHV3-73A0A0B4J1V6 119 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 M0R2P5 195 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 PROK1P58294 105 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 CLUHP3Q96NS8 147 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 LINC00467Q9BRT7 94 aa14.78□□□□□ -0.04
CLN3-230ENST00000568076 WNK1Q9H4A3 2382 aa14.77□□□□□ -0.04
CLN3-230ENST00000568076 TRBV25-1A0A075B6N4 114 aa14.77□□□□□ -0.04
CLN3-230ENST00000568076 INSP01308 110 aa14.77□□□□□ -0.04
CLN3-230ENST00000568076 ZNF415Q09FC8 603 aa14.77□□□□□ -0.04
CLN3-230ENST00000568076 HIGD1BQ9P298 99 aa14.77□□□□□ -0.04
CLN3-230ENST00000568076 FASNP49327 2511 aaKnown RBP14.77□□□□□ -0.04
CLN3-230ENST00000568076 ZNF418Q8TF45 676 aaPredicted RBP14.76□□□□□ -0.05
CLN3-230ENST00000568076 SETD2Q9BYW2 2564 aaPredicted RBP14.76□□□□□ -0.05
CLN3-230ENST00000568076 GCN1Q92616 2671 aaKnown RBP14.76□□□□□ -0.05
CLN3-230ENST00000568076 TRAV8-6A0A0B4J262 113 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 LINC01549A6NIU2 74 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 P0DMU3 169 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 FAM231AP0DMU4 169 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 FAM231CP0DMU5 169 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 TIMM17AQ99595 171 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 EDA2RQ9HAV5 297 aa14.76□□□□□ -0.05
CLN3-230ENST00000568076 CCL25O15444 150 aa14.75□□□□□ -0.05
CLN3-230ENST00000568076 SCGB2A2Q13296 93 aa14.75□□□□□ -0.05
CLN3-230ENST00000568076 NSUN5P1Q3KNT7 163 aa14.75□□□□□ -0.05
CLN3-230ENST00000568076 XCL2Q9UBD3 114 aa14.75□□□□□ -0.05
CLN3-230ENST00000568076 NIPBLQ6KC79 2804 aaeCLIP14.75□□□□□ -0.05
CLN3-230ENST00000568076 STHQ8IWL8 128 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 TMEM141Q96I45 108 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 CHAC1Q9BUX1 264 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 IGLV4-69A0A075B6H9 119 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 ADARB2-AS1A8MUL3 147 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 A8MWV9 139 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 OR11H12B2RN74 326 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 RHOHQ15669 191 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 PIK3CD-AS1Q5SR53 167 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 PTH2Q96A98 100 aa14.74□□□□□ -0.05
CLN3-230ENST00000568076 UBE2V1Q13404 147 aa14.73□□□□□ -0.05
CLN3-230ENST00000568076 I3L3M4 83 aa14.73□□□□□ -0.05
CLN3-230ENST00000568076 CFAP126Q5VTH2 177 aa14.73□□□□□ -0.05
CLN3-230ENST00000568076 C1orf158Q8N1D5 194 aa14.73□□□□□ -0.05
CLN3-230ENST00000568076 CST9LQ9H4G1 147 aa14.73□□□□□ -0.05
CLN3-230ENST00000568076 AZU1P20160 251 aa14.72□□□□□ -0.05
CLN3-230ENST00000568076 PMVKQ15126 192 aa14.72□□□□□ -0.05
CLN3-230ENST00000568076 Q6ZSN1 163 aa14.72□□□□□ -0.05
CLN3-230ENST00000568076 Q9UF83 564 aa14.72□□□□□ -0.05
CLN3-230ENST00000568076 NACAE9PAV3 2078 aa14.72□□□□□ -0.05
CLN3-230ENST00000568076 SAP30O75446 220 aa14.71□□□□□ -0.05
CLN3-230ENST00000568076 EMP1P54849 157 aa14.71□□□□□ -0.05
CLN3-230ENST00000568076 MRPL16Q9NX20 251 aaKnown RBP14.71□□□□□ -0.05
CLN3-230ENST00000568076 C11orf86A6NJI1 115 aa14.71□□□□□ -0.06
CLN3-230ENST00000568076 NDUFA7O95182 113 aa14.71□□□□□ -0.06
CLN3-230ENST00000568076 PTTG1IPP53801 180 aa14.71□□□□□ -0.06
CLN3-230ENST00000568076 A6NDN8 102 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 E9PLD3 99 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 K7EP13 123 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 FOSL1P15407 271 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 VAMP3Q15836 100 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 BEAN1Q3B7T3 259 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 C20orf203Q8NBC4 194 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 OPRPNQ99935 248 aaPredicted RBP14.7□□□□□ -0.06
CLN3-230ENST00000568076 SPXQ9BT56 116 aa14.7□□□□□ -0.06
CLN3-230ENST00000568076 OR11H2Q8NH07 326 aa14.69□□□□□ -0.06
CLN3-230ENST00000568076 HECTD1Q9ULT8 2610 aa14.69□□□□□ -0.06
CLN3-230ENST00000568076 IGHV3OR16-12A0A075B7B8 117 aa14.68□□□□□ -0.06
CLN3-230ENST00000568076 H3BRM9 83 aa14.68□□□□□ -0.06
CLN3-230ENST00000568076 FXYD2P54710 66 aa14.68□□□□□ -0.06
CLN3-230ENST00000568076 PRADC1Q9BSG0 188 aa14.68□□□□□ -0.06
CLN3-230ENST00000568076 LY6G6DO95868 133 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 IGLV1-51P01701 117 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 GCSHP23434 173 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 SETXQ7Z333 2677 aaKnown RBP14.67□□□□□ -0.06
CLN3-230ENST00000568076 MYMXA0A1B0GTQ4 84 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 ZNRF2Q8NHG8 242 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 IL17DQ8TAD2 202 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 WFDC10AQ9H1F0 79 aa14.67□□□□□ -0.06
CLN3-230ENST00000568076 KRTAP10-3P60369 221 aa14.66□□□□□ -0.06
CLN3-230ENST00000568076 AMMECR1LQ6DCA0 310 aa14.66□□□□□ -0.06
CLN3-230ENST00000568076 RS1O15537 224 aa14.65□□□□□ -0.06
CLN3-230ENST00000568076 C19orf73Q9NVV2 129 aa14.65□□□□□ -0.06
CLN3-230ENST00000568076 TNFRSF18Q9Y5U5 241 aa14.65□□□□□ -0.06
CLN3-230ENST00000568076 HIVEP2P31629 2446 aa14.65□□□□□ -0.06
CLN3-230ENST00000568076 GIG44P09565 113 aaPredicted RBP14.65□□□□□ -0.06
CLN3-230ENST00000568076 PAPPA-AS1Q5QFB9 102 aa14.65□□□□□ -0.06
CLN3-230ENST00000568076 RHODO00212 210 aa14.64□□□□□ -0.07
CLN3-230ENST00000568076 IGHV3-53P01767 116 aa14.64□□□□□ -0.07
CLN3-230ENST00000568076 CEND1Q8N111 149 aa14.64□□□□□ -0.07
CLN3-230ENST00000568076 RNASE8Q8TDE3 154 aaKnown RBP14.64□□□□□ -0.07
CLN3-230ENST00000568076 TM2D2Q9BX73 214 aa14.64□□□□□ -0.07
CLN3-230ENST00000568076 C9orf118A6NHY6 69 aa14.64□□□□□ -0.07
CLN3-230ENST00000568076 OTOGQ6ZRI0 2925 aa14.63□□□□□ -0.07
CLN3-230ENST00000568076 IGLV4-3A0A075B6K6 122 aa14.63□□□□□ -0.07
CLN3-230ENST00000568076 RAB37Q96AX2 223 aa14.63□□□□□ -0.07
CLN3-230ENST00000568076 FAM104AQ969W3 186 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms