RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 HMCN2Q8NDA2 5059 aa11.11□□□□□ -0.63
CLN3-216ENST00000565316 PFDN1O60925 122 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 IGLV2-8P01709 118 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 CRPP02741 224 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 TMEM97Q5BJF2 176 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 SPANXN1Q5VSR9 72 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 NTM-AS1Q6ZSK4 140 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.1□□□□□ -0.63
CLN3-216ENST00000565316 CHCHD5Q9BSY4 110 aa11.1□□□□□ -0.63
CLN3-216ENST00000565316 MUC21A0A0G2JKD1 596 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 MUC21A0A140T8X8 626 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 A0A1B0GV50 99 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 HMSDA8MTL9 139 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 ANGP03950 147 aaKnown RBP11.09□□□□□ -0.63
CLN3-216ENST00000565316 MIAQ16674 131 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 TMUB2Q71RG4 321 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 PRR34Q9NV39 138 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 USP17L23D6RBM5 183 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 F5H697 171 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 H2AFB1P0C5Y9 115 aa11.09□□□□□ -0.63
CLN3-216ENST00000565316 A0A0D9SG52 128 aa11.08□□□□□ -0.64
CLN3-216ENST00000565316 RPL35P42766 123 aaKnown RBP11.08□□□□□ -0.64
CLN3-216ENST00000565316 KRTAP26-1Q6PEX3 210 aa11.08□□□□□ -0.64
CLN3-216ENST00000565316 BCL2L11O43521 198 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 OXTP01178 125 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 PRSS1P07477 247 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 RBX1P62877 108 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 DGAT2L7PQ6IED9 249 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 C11orf52Q96A22 123 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 AP1S3Q96PC3 154 aa11.07□□□□□ -0.64
CLN3-216ENST00000565316 SMIM17P0DL12 118 aa11.06□□□□□ -0.64
CLN3-216ENST00000565316 IQCJQ1A5X6 159 aa11.06□□□□□ -0.64
CLN3-216ENST00000565316 DERL1Q9BUN8 251 aa11.06□□□□□ -0.64
CLN3-216ENST00000565316 KANTRA0A1W2PQU2 76 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 M0QY20 66 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 HLA-DQA1P01909 254 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 IGLC6P0CF74 106 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 SSTP61278 116 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 LINC00269Q8N2A0 174 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 C9orf163Q8N9P6 203 aa11.05□□□□□ -0.64
CLN3-216ENST00000565316 TRBV25-1A0A075B6N4 114 aa11.04□□□□□ -0.64
CLN3-216ENST00000565316 TRAV1-1A0A0B4J248 108 aa11.04□□□□□ -0.64
CLN3-216ENST00000565316 EIF5AP63241 154 aaKnown RBP11.04□□□□□ -0.64
CLN3-216ENST00000565316 CCL20P78556 96 aa11.04□□□□□ -0.64
CLN3-216ENST00000565316 GAGE6Q13070 117 aa11.04□□□□□ -0.64
CLN3-216ENST00000565316 MANBALQ9NQG1 85 aa11.04□□□□□ -0.64
CLN3-216ENST00000565316 IGHV1-24A0A0C4DH33 117 aa11.02□□□□□ -0.65
CLN3-216ENST00000565316 C19orf71A6NCJ1 209 aa11.02□□□□□ -0.65
CLN3-216ENST00000565316 GZMBP10144 247 aa11.02□□□□□ -0.65
CLN3-216ENST00000565316 RPS20P60866 119 aaKnown RBP11.02□□□□□ -0.65
CLN3-216ENST00000565316 CENPWQ5EE01 88 aa11.02□□□□□ -0.65
CLN3-216ENST00000565316 SERTAD4-AS1Q5TG53 156 aa11.02□□□□□ -0.65
CLN3-216ENST00000565316 FER1L6-AS1Q8NA97 138 aa11.02□□□□□ -0.65
CLN3-216ENST00000565316 H7C1H1 209 aa11.01□□□□□ -0.65
CLN3-216ENST00000565316 CACNG7P62955 275 aa11.01□□□□□ -0.65
CLN3-216ENST00000565316 SUMO4Q6EEV6 95 aa11.01□□□□□ -0.65
CLN3-216ENST00000565316 CLPSL2Q6UWE3 100 aa11.01□□□□□ -0.65
CLN3-216ENST00000565316 SDIM1Q6ZPB5 146 aa11.01□□□□□ -0.65
CLN3-216ENST00000565316 GNG13Q9P2W3 67 aa11.01□□□□□ -0.65
CLN3-216ENST00000565316 RPL37AP61513 92 aaKnown RBP11□□□□□ -0.65
CLN3-216ENST00000565316 REG3AQ06141 175 aa11□□□□□ -0.65
CLN3-216ENST00000565316 CLRN3Q8NCR9 226 aa11□□□□□ -0.65
CLN3-216ENST00000565316 OR2D3Q8NGH3 330 aa11□□□□□ -0.65
CLN3-216ENST00000565316 SMIM12Q96EX1 92 aa11□□□□□ -0.65
CLN3-216ENST00000565316 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11□□□□□ -0.65
CLN3-216ENST00000565316 A0A1B0GUV1 79 aa10.99□□□□□ -0.65
CLN3-216ENST00000565316 MGPP08493 103 aa10.99□□□□□ -0.65
CLN3-216ENST00000565316 RAB5CP51148 216 aa10.99□□□□□ -0.65
CLN3-216ENST00000565316 C20orf203Q8NBC4 194 aa10.99□□□□□ -0.65
CLN3-216ENST00000565316 DAZAP1Q96EP5 407 aaKnown RBP10.99□□□□□ -0.65
CLN3-216ENST00000565316 TPPP3Q9BW30 176 aa10.99□□□□□ -0.65
CLN3-216ENST00000565316 TRAV8-4A0A0B4J246 113 aa10.98□□□□□ -0.65
CLN3-216ENST00000565316 RAB19A4D1S5 217 aa10.98□□□□□ -0.65
CLN3-216ENST00000565316 F2Z2F3 143 aa10.98□□□□□ -0.65
CLN3-216ENST00000565316 PANO1I0J062 215 aa10.98□□□□□ -0.65
CLN3-216ENST00000565316 P01737 135 aa10.98□□□□□ -0.65
CLN3-216ENST00000565316 CNBPP62633 177 aaKnown RBP10.98□□□□□ -0.65
CLN3-216ENST00000565316 RASL11AQ6T310 242 aa10.98□□□□□ -0.65
CLN3-216ENST00000565316 GNG4P50150 75 aa10.97□□□□□ -0.65
CLN3-216ENST00000565316 HNRNPA3P51991 378 aaKnown RBP10.97□□□□□ -0.65
CLN3-216ENST00000565316 NKX2-5P52952 324 aaPredicted RBP10.97□□□□□ -0.65
CLN3-216ENST00000565316 CIRBPQ14011 172 aaKnown RBP10.97□□□□□ -0.65
CLN3-216ENST00000565316 PGLYRP4Q96LB8 373 aa10.97□□□□□ -0.65
CLN3-216ENST00000565316 TMEM243Q9BU79 118 aa10.97□□□□□ -0.65
CLN3-216ENST00000565316 IGLV10-54A0A075B6I4 117 aa10.96□□□□□ -0.65
CLN3-216ENST00000565316 XKRY2A2RUG3 117 aa10.96□□□□□ -0.65
CLN3-216ENST00000565316 GFRA4Q9GZZ7 299 aa10.96□□□□□ -0.65
CLN3-216ENST00000565316 TRBV20OR9-2A0A075B6H5 130 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 IGLV4-60A0A075B6I1 120 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 PDE6DO43924 150 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 TRGC1P0CF51 173 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 MEF2BQ02080 365 aaPredicted RBP10.95□□□□□ -0.66
CLN3-216ENST00000565316 WDR73Q6P4I2 378 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 LYZL1Q6UWQ5 148 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 C9orf62Q8N4C0 152 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 NIT2Q9NQR4 276 aa10.95□□□□□ -0.66
CLN3-216ENST00000565316 TEX46H3BTG2 121 aa10.94□□□□□ -0.66
CLN3-216ENST00000565316 IFNA1P01562 189 aa10.94□□□□□ -0.66
CLN3-216ENST00000565316 SULT1A2P50226 295 aa10.94□□□□□ -0.66
CLN3-216ENST00000565316 EIF5AL1Q6IS14 154 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms