RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 C14orf177Q52M58 125 aa10.23□□□□□ -0.77
CLK3-211ENST00000563297 TMUB2Q71RG4 321 aa10.23□□□□□ -0.77
CLK3-211ENST00000563297 KIF25-AS1Q9Y6Z4 181 aa10.23□□□□□ -0.77
CLK3-211ENST00000563297 ANGP03950 147 aaKnown RBP10.22□□□□□ -0.77
CLK3-211ENST00000563297 SSTP61278 116 aa10.22□□□□□ -0.77
CLK3-211ENST00000563297 ZNF345Q14585 488 aa10.22□□□□□ -0.77
CLK3-211ENST00000563297 SPANXN1Q5VSR9 72 aa10.22□□□□□ -0.77
CLK3-211ENST00000563297 NTM-AS1Q6ZSK4 140 aa10.22□□□□□ -0.77
CLK3-211ENST00000563297 AKAP14Q86UN6 197 aa10.22□□□□□ -0.77
CLK3-211ENST00000563297 CHCHD5Q9BSY4 110 aa10.22□□□□□ -0.77
CLK3-211ENST00000563297 F5H697 171 aa10.21□□□□□ -0.77
CLK3-211ENST00000563297 CRPP02741 224 aa10.21□□□□□ -0.77
CLK3-211ENST00000563297 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.21□□□□□ -0.77
CLK3-211ENST00000563297 VAX2Q9UIW0 290 aa10.21□□□□□ -0.77
CLK3-211ENST00000563297 LRP1Q07954 4544 aaKnown RBP10.21□□□□□ -0.78
CLK3-211ENST00000563297 HMSDA8MTL9 139 aa10.2□□□□□ -0.78
CLK3-211ENST00000563297 H2AFB1P0C5Y9 115 aa10.2□□□□□ -0.78
CLK3-211ENST00000563297 A0A0D9SG52 128 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 USP17L23D6RBM5 183 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 IGLV2-8P01709 118 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 PKIAP61925 76 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 MIAQ16674 131 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 TMEM97Q5BJF2 176 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 PRR34Q9NV39 138 aa10.19□□□□□ -0.78
CLK3-211ENST00000563297 PRSS1P07477 247 aa10.18□□□□□ -0.78
CLK3-211ENST00000563297 RPL35P42766 123 aaKnown RBP10.18□□□□□ -0.78
CLK3-211ENST00000563297 RBX1P62877 108 aa10.18□□□□□ -0.78
CLK3-211ENST00000563297 KRTAP26-1Q6PEX3 210 aa10.18□□□□□ -0.78
CLK3-211ENST00000563297 DERL1Q9BUN8 251 aa10.18□□□□□ -0.78
CLK3-211ENST00000563297 HLA-DQA1P01909 254 aa10.17□□□□□ -0.78
CLK3-211ENST00000563297 SMIM17P0DL12 118 aa10.17□□□□□ -0.78
CLK3-211ENST00000563297 CCL20P78556 96 aa10.17□□□□□ -0.78
CLK3-211ENST00000563297 GAGE6Q13070 117 aa10.17□□□□□ -0.78
CLK3-211ENST00000563297 DGAT2L7PQ6IED9 249 aa10.17□□□□□ -0.78
CLK3-211ENST00000563297 TRBV25-1A0A075B6N4 114 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 KANTRA0A1W2PQU2 76 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 BCL2L11O43521 198 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 GZMBP10144 247 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 LINC00269Q8N2A0 174 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 C9orf163Q8N9P6 203 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 AP1S3Q96PC3 154 aa10.16□□□□□ -0.78
CLK3-211ENST00000563297 M0QY20 66 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 OXTP01178 125 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 IGLC6P0CF74 106 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 IQCJQ1A5X6 159 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 CLPSL2Q6UWE3 100 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 C11orf52Q96A22 123 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 FAT3Q8TDW7 4589 aa10.15□□□□□ -0.78
CLK3-211ENST00000563297 EIF5AP63241 154 aaKnown RBP10.14□□□□□ -0.79
CLK3-211ENST00000563297 GNG13Q9P2W3 67 aa10.14□□□□□ -0.79
CLK3-211ENST00000563297 TRAV1-1A0A0B4J248 108 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 IGHV1-24A0A0C4DH33 117 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 C19orf71A6NCJ1 209 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 CENPWQ5EE01 88 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 SERTAD4-AS1Q5TG53 156 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 TCTE3Q8IZS6 198 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 FER1L6-AS1Q8NA97 138 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 OR2D3Q8NGH3 330 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 DAZAP1Q96EP5 407 aaKnown RBP10.13□□□□□ -0.79
CLK3-211ENST00000563297 TPPP3Q9BW30 176 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 MANBALQ9NQG1 85 aa10.13□□□□□ -0.79
CLK3-211ENST00000563297 PKHD1L1Q86WI1 4243 aa10.12□□□□□ -0.79
CLK3-211ENST00000563297 RAB19A4D1S5 217 aa10.12□□□□□ -0.79
CLK3-211ENST00000563297 MGPP08493 103 aa10.12□□□□□ -0.79
CLK3-211ENST00000563297 RPS20P60866 119 aaKnown RBP10.12□□□□□ -0.79
CLK3-211ENST00000563297 RPL37AP61513 92 aaKnown RBP10.12□□□□□ -0.79
CLK3-211ENST00000563297 SUMO4Q6EEV6 95 aa10.12□□□□□ -0.79
CLK3-211ENST00000563297 SDIM1Q6ZPB5 146 aa10.12□□□□□ -0.79
CLK3-211ENST00000563297 H7C1H1 209 aa10.11□□□□□ -0.79
CLK3-211ENST00000563297 PANO1I0J062 215 aa10.11□□□□□ -0.79
CLK3-211ENST00000563297 CACNG7P62955 275 aa10.11□□□□□ -0.79
CLK3-211ENST00000563297 REG3AQ06141 175 aa10.11□□□□□ -0.79
CLK3-211ENST00000563297 C20orf203Q8NBC4 194 aa10.11□□□□□ -0.79
CLK3-211ENST00000563297 CLRN3Q8NCR9 226 aa10.11□□□□□ -0.79
CLK3-211ENST00000563297 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.11□□□□□ -0.79
CLK3-211ENST00000563297 IGLV10-54A0A075B6I4 117 aa10.1□□□□□ -0.79
CLK3-211ENST00000563297 A0A1B0GUV1 79 aa10.1□□□□□ -0.79
CLK3-211ENST00000563297 HNRNPA3P51991 378 aaKnown RBP10.1□□□□□ -0.79
CLK3-211ENST00000563297 NKX2-5P52952 324 aaPredicted RBP10.1□□□□□ -0.79
CLK3-211ENST00000563297 IGLV4-60A0A075B6I1 120 aa10.09□□□□□ -0.79
CLK3-211ENST00000563297 F2Z2F3 143 aa10.09□□□□□ -0.79
CLK3-211ENST00000563297 RASL11AQ6T310 242 aa10.09□□□□□ -0.79
CLK3-211ENST00000563297 LYZL1Q6UWQ5 148 aa10.09□□□□□ -0.79
CLK3-211ENST00000563297 SMIM12Q96EX1 92 aa10.09□□□□□ -0.79
CLK3-211ENST00000563297 GFRA4Q9GZZ7 299 aa10.09□□□□□ -0.79
CLK3-211ENST00000563297 TRAV8-4A0A0B4J246 113 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 P01737 135 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 NTF3P20783 257 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 GNG4P50150 75 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 RAB5CP51148 216 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 TMEM243Q9BU79 118 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 NIT2Q9NQR4 276 aa10.08□□□□□ -0.8
CLK3-211ENST00000563297 TRBV20OR9-2A0A075B6H5 130 aa10.07□□□□□ -0.8
CLK3-211ENST00000563297 XKRY2A2RUG3 117 aa10.07□□□□□ -0.8
CLK3-211ENST00000563297 IFNA1P01562 189 aa10.07□□□□□ -0.8
CLK3-211ENST00000563297 TRGC1P0CF51 173 aa10.07□□□□□ -0.8
CLK3-211ENST00000563297 CNBPP62633 177 aaKnown RBP10.07□□□□□ -0.8
CLK3-211ENST00000563297 C9orf62Q8N4C0 152 aa10.07□□□□□ -0.8
CLK3-211ENST00000563297 DPH3P1Q9H4G8 78 aa10.07□□□□□ -0.8
CLK3-211ENST00000563297 MED9Q9NWA0 146 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms