RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ALKAL2Q6UX46 152 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 Q8N814 137 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 URGCP-MRPS24S4R325 110 aa10.68□□□□□ -0.7
CCDC88C-209ENST00000554872 RBFOX3A6NFN3 312 aa10.67□□□□□ -0.7
CCDC88C-209ENST00000554872 GZMBP10144 247 aa10.67□□□□□ -0.7
CCDC88C-209ENST00000554872 PKIAP61925 76 aa10.67□□□□□ -0.7
CCDC88C-209ENST00000554872 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.67□□□□□ -0.7
CCDC88C-209ENST00000554872 KRTAP4-5Q9BYR2 181 aa10.67□□□□□ -0.7
CCDC88C-209ENST00000554872 MUC21A0A0G2JKD1 596 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 MUC21A0A140T8X8 626 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 H7C1H1 209 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 NUDT10Q8NFP7 164 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 RMI2Q96E14 147 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 NUDT11Q96G61 164 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 DNAJC30Q96LL9 226 aa10.66□□□□□ -0.7
CCDC88C-209ENST00000554872 A0A087WX48 190 aa10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 F5H697 171 aa10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 M0QY20 66 aa10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 TRGC1P0CF51 173 aa10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 GCSHP23434 173 aa10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 KRTAP10-1P60331 282 aa10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 RPP21Q9H633 154 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-209ENST00000554872 K7EN84 100 aa10.64□□□□□ -0.71
CCDC88C-209ENST00000554872 KCNIP4Q6PIL6 250 aa10.64□□□□□ -0.71
CCDC88C-209ENST00000554872 OCC1Q8TAD7 63 aa10.64□□□□□ -0.71
CCDC88C-209ENST00000554872 TPPP3Q9BW30 176 aa10.64□□□□□ -0.71
CCDC88C-209ENST00000554872 IGLV5-52A0A0A0MRZ9 124 aa10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 FUSP35637 526 aaKnown RBP eCLIP10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 XGP55808 180 aa10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 Q0VG73 95 aa10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 LYZL1Q6UWQ5 148 aa10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 FAM231DQ6ZW35 169 aa10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 TMEM70Q9BUB7 260 aa10.63□□□□□ -0.71
CCDC88C-209ENST00000554872 NTF3P20783 257 aa10.62□□□□□ -0.71
CCDC88C-209ENST00000554872 IQCJQ1A5X6 159 aa10.62□□□□□ -0.71
CCDC88C-209ENST00000554872 SUMO4Q6EEV6 95 aa10.62□□□□□ -0.71
CCDC88C-209ENST00000554872 FRZBQ92765 325 aa10.62□□□□□ -0.71
CCDC88C-209ENST00000554872 DPH3P1Q9H4G8 78 aa10.62□□□□□ -0.71
CCDC88C-209ENST00000554872 KLK12Q9UKR0 248 aa10.62□□□□□ -0.71
CCDC88C-209ENST00000554872 CT83Q5H943 113 aa10.61□□□□□ -0.71
CCDC88C-209ENST00000554872 NTM-AS1Q6ZSK4 140 aa10.61□□□□□ -0.71
CCDC88C-209ENST00000554872 RNASE7Q9H1E1 156 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-209ENST00000554872 ABCA13Q86UQ4 5058 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 MGPP08493 103 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 SSTP61278 116 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 WFDC2Q14508 124 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 MPV17L2Q567V2 206 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 RASL11AQ6T310 242 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 PGLYRP4Q96LB8 373 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 FAM210AQ96ND0 272 aa10.6□□□□□ -0.71
CCDC88C-209ENST00000554872 TRBV25-1A0A075B6N4 114 aa10.59□□□□□ -0.71
CCDC88C-209ENST00000554872 A0A1B0GVG6 124 aa10.59□□□□□ -0.71
CCDC88C-209ENST00000554872 NKX2-5P52952 324 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-209ENST00000554872 FOXA3P55318 350 aaPredicted RBP10.59□□□□□ -0.71
CCDC88C-209ENST00000554872 UBE2WQ96B02 151 aa10.59□□□□□ -0.71
CCDC88C-209ENST00000554872 NIT2Q9NQR4 276 aa10.59□□□□□ -0.71
CCDC88C-209ENST00000554872 TMEM262E9PQX1 116 aa10.58□□□□□ -0.72
CCDC88C-209ENST00000554872 ENHOQ6UWT2 76 aa10.58□□□□□ -0.72
CCDC88C-209ENST00000554872 GTSF1Q8WW33 167 aa10.58□□□□□ -0.72
CCDC88C-209ENST00000554872 CHCHD5Q9BSY4 110 aa10.58□□□□□ -0.72
CCDC88C-209ENST00000554872 PRR34Q9NV39 138 aa10.58□□□□□ -0.72
CCDC88C-209ENST00000554872 IGKV2D-24A0A075B6R9 120 aa10.57□□□□□ -0.72
CCDC88C-209ENST00000554872 IGHV1-24A0A0C4DH33 117 aa10.57□□□□□ -0.72
CCDC88C-209ENST00000554872 A8MWL6 223 aa10.57□□□□□ -0.72
CCDC88C-209ENST00000554872 MIAQ16674 131 aa10.57□□□□□ -0.72
CCDC88C-209ENST00000554872 Q8N976 141 aa10.57□□□□□ -0.72
CCDC88C-209ENST00000554872 GATCO43716 136 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 CRPP02741 224 aa10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 TWIST1Q15672 202 aa10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 Q6ZSA8 131 aa10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 LINC01551Q86U37 167 aa10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 SMIM7Q9BQ49 75 aa10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 C1orf43Q9BWL3 253 aa10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 EIF5A2Q9GZV4 153 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-209ENST00000554872 FAM231BA6NCW3 169 aa10.55□□□□□ -0.72
CCDC88C-209ENST00000554872 ANGP03950 147 aaKnown RBP10.55□□□□□ -0.72
CCDC88C-209ENST00000554872 RBX1P62877 108 aa10.55□□□□□ -0.72
CCDC88C-209ENST00000554872 C15orf54Q8N8G6 183 aa10.55□□□□□ -0.72
CCDC88C-209ENST00000554872 BAALCQ8WXS3 180 aa10.55□□□□□ -0.72
CCDC88C-209ENST00000554872 GFRA4Q9GZZ7 299 aa10.55□□□□□ -0.72
CCDC88C-209ENST00000554872 A0A1B0GUV1 79 aa10.54□□□□□ -0.72
CCDC88C-209ENST00000554872 EPM2AB3EWF7 344 aa10.54□□□□□ -0.72
CCDC88C-209ENST00000554872 SRP19P09132 144 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-209ENST00000554872 C14orf177Q52M58 125 aa10.54□□□□□ -0.72
CCDC88C-209ENST00000554872 TEX261Q6UWH6 196 aa10.54□□□□□ -0.72
CCDC88C-209ENST00000554872 OSTCQ9NRP0 149 aa10.54□□□□□ -0.72
CCDC88C-209ENST00000554872 LECT2O14960 151 aa10.53□□□□□ -0.72
CCDC88C-209ENST00000554872 FAM74A3Q4VXF1 159 aa10.53□□□□□ -0.72
CCDC88C-209ENST00000554872 SMIM15Q7Z3B0 74 aa10.53□□□□□ -0.72
CCDC88C-209ENST00000554872 GATD1Q8NB37 220 aa10.53□□□□□ -0.72
CCDC88C-209ENST00000554872 TSKUQ8WUA8 353 aa10.53□□□□□ -0.72
CCDC88C-209ENST00000554872 TMEM243Q9BU79 118 aa10.53□□□□□ -0.72
CCDC88C-209ENST00000554872 ZNF727A8MUV8 499 aa10.52□□□□□ -0.73
CCDC88C-209ENST00000554872 SMDT1Q9H4I9 107 aa10.52□□□□□ -0.73
CCDC88C-209ENST00000554872 CEBPGP53567 150 aa10.51□□□□□ -0.73
CCDC88C-209ENST00000554872 GAGE6Q13070 117 aa10.51□□□□□ -0.73
CCDC88C-209ENST00000554872 COTL1Q14019 142 aa10.51□□□□□ -0.73
CCDC88C-209ENST00000554872 KRTAP26-1Q6PEX3 210 aa10.51□□□□□ -0.73
CCDC88C-209ENST00000554872 TRBV6-5A0A0K0K1A5 114 aa10.5□□□□□ -0.73
CCDC88C-209ENST00000554872 NCR2O95944 276 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms