RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ESRGQ1W209 222 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 Q6ZSR3 168 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 RNF185Q96GF1 192 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 POLEQ07864 2286 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 COL4A1P02462 1669 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 UBR3Q6ZT12 1888 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.66□□□□□ -1.34
YBX3-208ENST00000540447 IGLV3-9A0A075B6K5 115 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 IGHV4-30-2A0A087WSY4 118 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 ZNF503-AS2A6NEH8 195 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 RMI2Q96E14 147 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 URB1-AS1Q96HZ7 61 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 HHLA3Q9XRX5 114 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 WFDC10BQ8IUB3 73 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 ZMAT4Q9H898 229 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 PLXNB2O15031 1838 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 ADAMTS7Q9UKP4 1686 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 WFDC10AQ9H1F0 79 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 CAMK2N2Q96S95 79 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 RLFQ13129 1914 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 P0C879 139 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 COL8A2P25067 703 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 FAM222AQ5U5X8 452 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 C22orf34Q6ZV56 151 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 CDKN2A-AS1Q9UH64 79 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 LCTP09848 1927 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 FRMPD3Q5JV73 1810 aa6.65□□□□□ -1.34
YBX3-208ENST00000540447 C1orf53Q5VUE5 145 aa6.65□□□□□ -1.35
YBX3-208ENST00000540447 PLXNA1Q9UIW2 1896 aa6.65□□□□□ -1.35
YBX3-208ENST00000540447 NOP10Q9NPE3 64 aaKnown RBP6.65□□□□□ -1.35
YBX3-208ENST00000540447 IGLV10-54A0A075B6I4 117 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 IGLV4-3A0A075B6K6 122 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 SEM1Q6ZVN7 128 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 PLXND1Q9Y4D7 1925 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 DEFB123Q8N688 67 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 NPBQ8NG41 125 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 PLCE1Q9P212 2302 aa6.64□□□□□ -1.35
YBX3-208ENST00000540447 PLAC8L1A1L4L8 177 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 ODF3Q96PU9 254 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 MED12LQ86YW9 2145 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 IGKV1D-37A0A075B6S9 117 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 A0A0J9YWU9 116 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 CTSGP08311 255 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 ANK1P16157 1881 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 IGLV3-19P01714 112 aa6.63□□□□□ -1.35
YBX3-208ENST00000540447 IGLV11-55A0A075B6I3 123 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 OXLD1Q5BKU9 147 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 THSD7AQ9UPZ6 1657 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 SBF1O95248 1867 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 NLRC5Q86WI3 1866 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 CADP27708 2225 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 PLXNA3P51805 1871 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 A0A0G2JNJ9 132 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 C3orf84H3BNL1 204 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 CRIP1P50238 77 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 VWCEQ96DN2 955 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 Q9UFV3 132 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 PAPPA2Q9BXP8 1791 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 COX6B1P14854 86 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 C11orf53Q8IXP5 236 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 EDN2P20800 178 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 Q0VFX4 171 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 Q8N6K4 173 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 RITA1Q96K30 269 aa6.62□□□□□ -1.35
YBX3-208ENST00000540447 A0A0J9YX75 114 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 C17orf82Q86X59 251 aaPredicted RBP6.61□□□□□ -1.35
YBX3-208ENST00000540447 POM121L12Q8N7R1 296 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 SMIM11BQ8TCY0 68 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 CELA1Q9UNI1 258 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 Q8N9L7 120 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 PCDH15Q96QU1 1955 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 CEP290O15078 2479 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 NRACQ8N912 160 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 TMEM89A2RUT3 159 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 IBA57-AS1B1ANH7 110 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 E7EUB6 86 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 TMEM254Q8TBM7 123 aa6.61□□□□□ -1.35
YBX3-208ENST00000540447 UBE2DNLQ8IWF7 75 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 C6orf99Q4VX62 202 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 C1orf158Q8N1D5 194 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 TRBV6-5A0A0K0K1A5 114 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 CXCL6P80162 114 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 ZNF883P0CG24 379 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 SP5Q6BEB4 398 aaPredicted RBP6.6□□□□□ -1.35
YBX3-208ENST00000540447 Q8N3U1 123 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 ZNF407Q9C0G0 2248 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 CD164Q04900 197 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 KRTAP27-1Q3LI81 207 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 WFDC13Q8IUB5 93 aa6.6□□□□□ -1.35
YBX3-208ENST00000540447 TANC1Q9C0D5 1861 aa6.59□□□□□ -1.35
YBX3-208ENST00000540447 RUSC1-AS1Q66K80 236 aa6.59□□□□□ -1.35
YBX3-208ENST00000540447 FAM19A1Q7Z5A9 133 aa6.59□□□□□ -1.35
YBX3-208ENST00000540447 IGKV2D-24A0A075B6R9 120 aa6.59□□□□□ -1.35
YBX3-208ENST00000540447 IGLV2-23P01705 113 aa6.59□□□□□ -1.35
YBX3-208ENST00000540447 TANC2Q9HCD6 1990 aa6.59□□□□□ -1.35
YBX3-208ENST00000540447 COL18A1P39060 1754 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 LY6HO94772 140 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 HILS1P60008 231 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 BEAN1Q3B7T3 259 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 LINC00467Q9BRT7 94 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms