RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ZNF479Q96JC4 524 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 TRBV7-3A0A075B6L6 115 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 TRBV6-5A0A0K0K1A5 114 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 C11orf86A6NJI1 115 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 M0QY20 66 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 INSL3P51460 131 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 KRTAP10-9P60411 292 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 ZNF876PQ49A33 203 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 GAGE13Q4V321 117 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 AMTNQ6UX39 209 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 C18orf65Q6ZTR6 163 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 TMEM141Q96I45 108 aa9.73□□□□□ -0.85
LDLR-203ENST00000535915 BBC3Q96PG8 261 aaPredicted RBP9.73□□□□□ -0.85
LDLR-203ENST00000535915 MYO9AB2RTY4 2548 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 NAV2Q8IVL1 2488 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 PRRC2AP48634 2157 aaKnown RBP9.72□□□□□ -0.85
LDLR-203ENST00000535915 IGLV4-69A0A075B6H9 119 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 ZNF815PA8K554 130 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 C12orf74Q32Q52 190 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 MORN3Q6PF18 240 aaPredicted RBP9.72□□□□□ -0.85
LDLR-203ENST00000535915 RNF152Q8N8N0 203 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 TIMM17AQ99595 171 aa9.72□□□□□ -0.85
LDLR-203ENST00000535915 KNCNA6PVL3 124 aa9.71□□□□□ -0.85
LDLR-203ENST00000535915 IGLL5B9A064 214 aa9.71□□□□□ -0.85
LDLR-203ENST00000535915 LINC01619G3V211 115 aa9.71□□□□□ -0.85
LDLR-203ENST00000535915 HTN1P15515 57 aa9.71□□□□□ -0.85
LDLR-203ENST00000535915 PAPPA-AS1Q5QFB9 102 aa9.71□□□□□ -0.85
LDLR-203ENST00000535915 SCGB1D4Q6XE38 83 aa9.71□□□□□ -0.85
LDLR-203ENST00000535915 TRGV11A0A075B6L2 103 aa9.71□□□□□ -0.86
LDLR-203ENST00000535915 SPINK8P0C7L1 97 aa9.71□□□□□ -0.86
LDLR-203ENST00000535915 TRPT1Q86TN4 253 aaKnown RBP9.71□□□□□ -0.86
LDLR-203ENST00000535915 A0A1B0GWB2 263 aa9.7□□□□□ -0.86
LDLR-203ENST00000535915 APOMO95445 188 aa9.7□□□□□ -0.86
LDLR-203ENST00000535915 HERVK_113P61574 105 aa9.7□□□□□ -0.86
LDLR-203ENST00000535915 ZNF418Q8TF45 676 aaPredicted RBP9.7□□□□□ -0.86
LDLR-203ENST00000535915 DEFB131AP59861 70 aa9.7□□□□□ -0.86
LDLR-203ENST00000535915 KLHL30-AS1Q8NEE0 82 aa9.7□□□□□ -0.86
LDLR-203ENST00000535915 ZNF469Q96JG9 3925 aaPredicted RBP9.7□□□□□ -0.86
LDLR-203ENST00000535915 RBMY1A1P0DJD3 496 aaKnown RBP9.69□□□□□ -0.86
LDLR-203ENST00000535915 RBMY1CP0DJD4 496 aa9.69□□□□□ -0.86
LDLR-203ENST00000535915 RBMY1FQ15415 496 aaKnown RBP9.69□□□□□ -0.86
LDLR-203ENST00000535915 DEFB113Q30KQ7 82 aa9.69□□□□□ -0.86
LDLR-203ENST00000535915 KHDC1LQ5JSQ8 128 aa9.69□□□□□ -0.86
LDLR-203ENST00000535915 TMEM170BQ5T4T1 132 aa9.69□□□□□ -0.86
LDLR-203ENST00000535915 PLEKHB2Q96CS7 222 aa9.69□□□□□ -0.86
LDLR-203ENST00000535915 DUX3Q96PT4 197 aa9.69□□□□□ -0.86
LDLR-203ENST00000535915 TLN2Q9Y4G6 2542 aa9.68□□□□□ -0.86
LDLR-203ENST00000535915 NSUN5P1Q3KNT7 163 aa9.68□□□□□ -0.86
LDLR-203ENST00000535915 Q96MF0 132 aa9.68□□□□□ -0.86
LDLR-203ENST00000535915 SS18L2Q9UHA2 77 aa9.68□□□□□ -0.86
LDLR-203ENST00000535915 SRSF9Q13242 221 aaKnown RBP eCLIP9.68□□□□□ -0.86
LDLR-203ENST00000535915 RHOHQ15669 191 aa9.68□□□□□ -0.86
LDLR-203ENST00000535915 ZNF843Q8N446 348 aa9.68□□□□□ -0.86
LDLR-203ENST00000535915 AKAP9Q99996 3911 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 TSPAN13O95857 204 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 ZNRF2Q8NHG8 242 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 OPRPNQ99935 248 aaPredicted RBP9.67□□□□□ -0.86
LDLR-203ENST00000535915 PEMTQ9UBM1 199 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 NACAE9PAV3 2078 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 APCP25054 2843 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 I3L3M4 83 aa9.67□□□□□ -0.86
LDLR-203ENST00000535915 IGHV3-73A0A0B4J1V6 119 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 H3BMM0 161 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 P0DMU3 169 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 FAM231AP0DMU4 169 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 FAM231CP0DMU5 169 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 TMEM61Q8N0U2 210 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 Q8N2B8 174 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 RNF183Q96D59 192 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 CHD6Q8TD26 2715 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 FOXI1Q12951 378 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 RRN3P1Q2M238 152 aa9.66□□□□□ -0.86
LDLR-203ENST00000535915 MT-ATP8P03928 68 aa9.65□□□□□ -0.86
LDLR-203ENST00000535915 PRM2P04554 102 aa9.65□□□□□ -0.86
LDLR-203ENST00000535915 C20orf203Q8NBC4 194 aa9.65□□□□□ -0.86
LDLR-203ENST00000535915 RBMY1BA6NDE4 496 aaKnown RBP9.65□□□□□ -0.86
LDLR-203ENST00000535915 RBMY1EA6NEQ0 496 aaKnown RBP9.65□□□□□ -0.86
LDLR-203ENST00000535915 A6NJY4 79 aa9.65□□□□□ -0.86
LDLR-203ENST00000535915 RBMY1DP0C7P1 496 aaKnown RBP9.65□□□□□ -0.86
LDLR-203ENST00000535915 HIST2H2BDQ6DRA6 164 aa9.65□□□□□ -0.86
LDLR-203ENST00000535915 C4orf3Q8WVX3 66 aa9.65□□□□□ -0.86
LDLR-203ENST00000535915 LRRC75A-AS1Q8N1F1 130 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 DYNLRB2Q8TF09 96 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 DLX4Q92988 240 aaPredicted RBP9.64□□□□□ -0.87
LDLR-203ENST00000535915 PRO0461Q9UI25 63 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 ERG28Q9UKR5 140 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 TSPEAR-AS2P59090 65 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 ANAPC13Q9BS18 74 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 CDIP1Q9H305 208 aa9.64□□□□□ -0.87
LDLR-203ENST00000535915 A0A0J9YY99 117 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 PROK1P58294 105 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 C1QTNF4Q9BXJ3 329 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 WNK1Q9H4A3 2382 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 Q6ZUT4 128 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 NFE4Q86UQ8 179 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 MAP6D1Q9H9H5 199 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 NF1P21359 2839 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 ITPR3Q14573 2671 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 NBPF19A0A087WUL8 3843 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 EPG5Q9HCE0 2579 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms