RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ZFAND2AQ8N6M9 145 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 TLN2Q9Y4G6 2542 aa10.63□□□□□ -0.71
USP48-213ENST00000529637 NDUFA4O00483 81 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 IGHV3-33P01772 117 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 SMIM20Q8N5G0 67 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 LINC00477Q96M19 166 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 J3QQQ9 107 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 HERVK_113P61574 105 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 HERV-K104P63124 156 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 PMVKQ15126 192 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 ZNF580Q9UK33 172 aa10.62□□□□□ -0.71
USP48-213ENST00000529637 TRAV2A0A0B4J234 112 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 TRBV7-9A0A0J9YWB2 115 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 GAGE12JA6NER3 117 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 OVOL1O14753 267 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 GAGE7O76087 117 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 IGKV3-20P01619 116 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 GAGE12FP0CL80 117 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 GAGE12GP0CL81 117 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 GAGE12IP0CL82 117 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 GAGE4Q13068 117 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 ODF3Q96PU9 254 aa10.61□□□□□ -0.71
USP48-213ENST00000529637 TMEM263Q8WUH6 116 aaKnown RBP10.61□□□□□ -0.71
USP48-213ENST00000529637 RNASE3P12724 160 aaKnown RBP10.6□□□□□ -0.71
USP48-213ENST00000529637 C10orf105Q8TEF2 133 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 NRGNQ92686 78 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 PTPN13Q12923 2485 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 NOTCH3Q9UM47 2321 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 TTC32Q5I0X7 151 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 FAM159AQ6UWV7 190 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 MUSTN1Q8IVN3 82 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 LINC00315P59091 139 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 USMG5Q96IX5 58 aa10.6□□□□□ -0.71
USP48-213ENST00000529637 ANKRD17O75179 2603 aaKnown RBP10.59□□□□□ -0.71
USP48-213ENST00000529637 A0A087WWL8 130 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 IFITM1P13164 125 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 EDN2P20800 178 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 ABCA12Q86UK0 2595 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 IGHG2P01859 326 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 MSMBP08118 114 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 KLK9Q2XQG4 91 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 PRORYQ9H606 182 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 KLK9Q9UKQ9 250 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 ZANQ9Y493 2812 aa10.59□□□□□ -0.71
USP48-213ENST00000529637 F5H697 171 aa10.58□□□□□ -0.72
USP48-213ENST00000529637 LGALS3P17931 250 aaKnown RBP10.58□□□□□ -0.72
USP48-213ENST00000529637 RPL32P62910 135 aaKnown RBP10.58□□□□□ -0.72
USP48-213ENST00000529637 Q1RN00 199 aa10.58□□□□□ -0.72
USP48-213ENST00000529637 C3orf56Q8N813 242 aa10.58□□□□□ -0.72
USP48-213ENST00000529637 C15orf53Q8NAA6 179 aa10.58□□□□□ -0.72
USP48-213ENST00000529637 LINC01620Q4KN68 170 aa10.58□□□□□ -0.72
USP48-213ENST00000529637 DAZ1Q9NQZ3 744 aaKnown RBP10.58□□□□□ -0.72
USP48-213ENST00000529637 LENEPQ9Y5L5 61 aa10.58□□□□□ -0.72
USP48-213ENST00000529637 IGSF10Q6WRI0 2623 aa10.57□□□□□ -0.72
USP48-213ENST00000529637 ADARB2-AS1A8MUL3 147 aa10.57□□□□□ -0.72
USP48-213ENST00000529637 ZNF876PQ49A33 203 aa10.57□□□□□ -0.72
USP48-213ENST00000529637 C19orf54Q5BKX5 351 aa10.57□□□□□ -0.72
USP48-213ENST00000529637 KIF25-AS1Q9Y6Z4 181 aa10.57□□□□□ -0.72
USP48-213ENST00000529637 POLR2KP53803 58 aaKnown RBP10.57□□□□□ -0.72
USP48-213ENST00000529637 MAPK1IP1LQ8NDC0 245 aa10.57□□□□□ -0.72
USP48-213ENST00000529637 A6NDX4 124 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 NAV2Q8IVL1 2488 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 SUMO4Q6EEV6 95 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 Q6ZSV7 163 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 TRAV12-3A0A0B4J271 114 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 AVPP01185 164 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 PAPPA-AS1Q5QFB9 102 aa10.56□□□□□ -0.72
USP48-213ENST00000529637 ZNF256Q9Y2P7 627 aaPredicted RBP10.56□□□□□ -0.72
USP48-213ENST00000529637 FAM74A4Q5TZK3 123 aa10.55□□□□□ -0.72
USP48-213ENST00000529637 TRAV8-4A0A0B4J246 113 aa10.55□□□□□ -0.72
USP48-213ENST00000529637 SDHAF1A6NFY7 115 aa10.55□□□□□ -0.72
USP48-213ENST00000529637 TRIAP1O43715 76 aa10.55□□□□□ -0.72
USP48-213ENST00000529637 CFAP161Q6P656 301 aa10.55□□□□□ -0.72
USP48-213ENST00000529637 C10orf99Q6UWK7 81 aa10.55□□□□□ -0.72
USP48-213ENST00000529637 SOCS3O14543 225 aa10.54□□□□□ -0.72
USP48-213ENST00000529637 ZNF462Q96JM2 2506 aa10.54□□□□□ -0.72
USP48-213ENST00000529637 IGHV4-59P01825 116 aa10.54□□□□□ -0.72
USP48-213ENST00000529637 SETD2Q9BYW2 2564 aaPredicted RBP10.54□□□□□ -0.72
USP48-213ENST00000529637 ID1P41134 155 aa10.54□□□□□ -0.72
USP48-213ENST00000529637 SONP18583 2426 aaKnown RBP10.53□□□□□ -0.72
USP48-213ENST00000529637 P0DMU3 169 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 FAM231AP0DMU4 169 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 FAM231CP0DMU5 169 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 ATXN8Q156A1 80 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 B4DSR2 109 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 DUX5Q96PT3 197 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 TIMM17AQ99595 171 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 FAM110AQ9BQ89 295 aa10.53□□□□□ -0.72
USP48-213ENST00000529637 TRAV12-2A0A075B6T6 113 aa10.52□□□□□ -0.72
USP48-213ENST00000529637 IGHV4OR15-8A0A075B7B6 117 aa10.52□□□□□ -0.72
USP48-213ENST00000529637 A0A087WW49 117 aa10.52□□□□□ -0.72
USP48-213ENST00000529637 TMEM223A0PJW6 202 aa10.52□□□□□ -0.72
USP48-213ENST00000529637 TMEM141Q96I45 108 aa10.52□□□□□ -0.72
USP48-213ENST00000529637 A0A0B4J2C4 111 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 H3BUA1 57 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 M0QXV9 152 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 DUX3Q96PT4 197 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 CHCHD5Q9BSY4 110 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 A0A0J9YXV3 536 aa10.52□□□□□ -0.73
USP48-213ENST00000529637 VCYO14598 125 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms