RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 HAMPP81172 84 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 RPL36AP83881 106 aaKnown RBP7.03□□□□□ -1.28
CD44-227ENST00000528086 ZNF56Q15929 161 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 SUMO4Q6EEV6 95 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 CDPF1Q6NVV7 123 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 Q8N814 137 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 RPL36ALQ969Q0 106 aaKnown RBP7.03□□□□□ -1.28
CD44-227ENST00000528086 CNFNQ9BYD5 112 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 FAM30AQ9NZY2 134 aa7.03□□□□□ -1.28
CD44-227ENST00000528086 C9JQL5 133 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 P01737 135 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 NTF3P20783 257 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 FOXA3P55318 350 aaPredicted RBP7.02□□□□□ -1.29
CD44-227ENST00000528086 ATRAIDQ6UW56 229 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 ENHOQ6UWT2 76 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 TPPP3Q9BW30 176 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 KLK12Q9UKR0 248 aa7.02□□□□□ -1.29
CD44-227ENST00000528086 TMEM250H0YL14 139 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 LECT2O14960 151 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 TAGLN2P37802 199 aaKnown RBP7.01□□□□□ -1.29
CD44-227ENST00000528086 RPS20P60866 119 aaKnown RBP7.01□□□□□ -1.29
CD44-227ENST00000528086 BLOC1S1P78537 153 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 MPV17L2Q567V2 206 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 TOR2AQ5JU69 321 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 KRTAP26-1Q6PEX3 210 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 NTN5Q8WTR8 489 aaPredicted RBP7.01□□□□□ -1.29
CD44-227ENST00000528086 DAZAP1Q96EP5 407 aaKnown RBP7.01□□□□□ -1.29
CD44-227ENST00000528086 AP1S3Q96PC3 154 aa7.01□□□□□ -1.29
CD44-227ENST00000528086 F2Z2F3 143 aa7□□□□□ -1.29
CD44-227ENST00000528086 F5H697 171 aa7□□□□□ -1.29
CD44-227ENST00000528086 SRP19P09132 144 aaKnown RBP7□□□□□ -1.29
CD44-227ENST00000528086 GCSHP23434 173 aa7□□□□□ -1.29
CD44-227ENST00000528086 CACNG7P62955 275 aa7□□□□□ -1.29
CD44-227ENST00000528086 WDR73Q6P4I2 378 aa7□□□□□ -1.29
CD44-227ENST00000528086 Q8N976 141 aa7□□□□□ -1.29
CD44-227ENST00000528086 DEFB104AQ8WTQ1 72 aa7□□□□□ -1.29
CD44-227ENST00000528086 BAALCQ8WXS3 180 aa7□□□□□ -1.29
CD44-227ENST00000528086 RPP21Q9H633 154 aaKnown RBP7□□□□□ -1.29
CD44-227ENST00000528086 TRAV8-3A0A0A6YYJ7 113 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 EREGO14944 169 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 GAS8-AS1O95177 125 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 SRSF3P84103 164 aaKnown RBP6.99□□□□□ -1.29
CD44-227ENST00000528086 GATD1Q8NB37 220 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 UBE2WQ96B02 151 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 FAM210AQ96ND0 272 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 GFRA4Q9GZZ7 299 aa6.99□□□□□ -1.29
CD44-227ENST00000528086 IGLV5-52A0A0A0MRZ9 124 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 TRAV26-2A0A0B4J265 109 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 PSCAO43653 123 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 MGPP08493 103 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 IQCJQ1A5X6 159 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 LINC01620Q4KN68 170 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 Q6ZSA8 131 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 FAM231DQ6ZW35 169 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 LINC01551Q86U37 167 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 CHCHD7Q9BUK0 85 aa6.98□□□□□ -1.29
CD44-227ENST00000528086 SRRM2Q9UQ35 2752 aaKnown RBP6.98□□□□□ -1.29
CD44-227ENST00000528086 NDUFS6O75380 124 aaKnown RBP6.97□□□□□ -1.29
CD44-227ENST00000528086 RBX1P62877 108 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 GAGE6Q13070 117 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 C15orf54Q8N8G6 183 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 TM2D2Q9BX73 214 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 DPH3P1Q9H4G8 78 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 BIN3Q9NQY0 253 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 PRR34Q9NV39 138 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 MYCBP2O75592 4640 aa6.97□□□□□ -1.29
CD44-227ENST00000528086 IGLV4-60A0A075B6I1 120 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 IGKV2D-24A0A075B6R9 120 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 A0A087WX48 190 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 TMEM262E9PQX1 116 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 SMR3BP02814 79 aaPredicted RBP6.96□□□□□ -1.3
CD44-227ENST00000528086 SMIM17P0DL12 118 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 RASL11AQ6T310 242 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 C20orf203Q8NBC4 194 aa6.96□□□□□ -1.3
CD44-227ENST00000528086 RPL39LQ96EH5 51 aaKnown RBP6.96□□□□□ -1.3
CD44-227ENST00000528086 FLG2Q5D862 2391 aaPredicted RBP6.95□□□□□ -1.3
CD44-227ENST00000528086 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.95□□□□□ -1.3
CD44-227ENST00000528086 XKRY2A2RUG3 117 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 GATCO43716 136 aaKnown RBP6.95□□□□□ -1.3
CD44-227ENST00000528086 TRGC1P0CF51 173 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 CEBPGP53567 150 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 TWIST1Q15672 202 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 PGLYRP4Q96LB8 373 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 SMIM7Q9BQ49 75 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 CHCHD5Q9BSY4 110 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 NIT2Q9NQR4 276 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 V9GYV3 84 aa6.95□□□□□ -1.3
CD44-227ENST00000528086 CT83Q5H943 113 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 CLPSL2Q6UWE3 100 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 TEX261Q6UWH6 196 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 RNF185Q96GF1 192 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 TMEM70Q9BUB7 260 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 EIF5A2Q9GZV4 153 aaKnown RBP6.94□□□□□ -1.3
CD44-227ENST00000528086 OSTCQ9NRP0 149 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 URGCP-MRPS24S4R325 110 aa6.94□□□□□ -1.3
CD44-227ENST00000528086 PKHD1L1Q86WI1 4243 aa6.93□□□□□ -1.3
CD44-227ENST00000528086 TRBV25-1A0A075B6N4 114 aa6.93□□□□□ -1.3
CD44-227ENST00000528086 IGHV1-24A0A0C4DH33 117 aa6.93□□□□□ -1.3
CD44-227ENST00000528086 FAM231BA6NCW3 169 aa6.93□□□□□ -1.3
CD44-227ENST00000528086 ZNF727A8MUV8 499 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms