RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAM222AQ5U5X8 452 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 FAM19A2Q8N3H0 131 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 SMIM2Q9BVW6 85 aa14.99□□□□□ -0.01
VPS28-208ENST00000527797 TRBV6-5A0A0K0K1A5 114 aa14.98□□□□□ -0.01
VPS28-208ENST00000527797 DEFB130BP0DP73 79 aa14.98□□□□□ -0.01
VPS28-208ENST00000527797 DEFB130AP0DP74 79 aa14.98□□□□□ -0.01
VPS28-208ENST00000527797 Q6ZSN1 163 aa14.98□□□□□ -0.01
VPS28-208ENST00000527797 PACRGQ96M98 296 aaPredicted RBP14.98□□□□□ -0.01
VPS28-208ENST00000527797 IGLV2-18A0A075B6J9 118 aa14.97□□□□□ -0.01
VPS28-208ENST00000527797 RETNQ9HD89 108 aa14.97□□□□□ -0.01
VPS28-208ENST00000527797 LINC01546A6NGU7 62 aa14.96□□□□□ -0.01
VPS28-208ENST00000527797 RPL32P62910 135 aaKnown RBP14.96□□□□□ -0.01
VPS28-208ENST00000527797 C18orf15Q96N68 181 aa14.96□□□□□ -0.01
VPS28-208ENST00000527797 DKK2Q9UBU2 259 aa14.96□□□□□ -0.01
VPS28-208ENST00000527797 PMCHL1Q16048 86 aa14.95□□□□□ -0.02
VPS28-208ENST00000527797 OR10D4PQ8NGN7 298 aa14.95□□□□□ -0.02
VPS28-208ENST00000527797 IGHV1-24A0A0C4DH33 117 aa14.95□□□□□ -0.02
VPS28-208ENST00000527797 TMEM70Q9BUB7 260 aa14.95□□□□□ -0.02
VPS28-208ENST00000527797 SDHAF1A6NFY7 115 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 VCYO14598 125 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 P0DMU3 169 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 FAM231AP0DMU4 169 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 FAM231CP0DMU5 169 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 POLR2KP53803 58 aaKnown RBP14.94□□□□□ -0.02
VPS28-208ENST00000527797 SBSPONQ8IVN8 264 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 TNFRSF18Q9Y5U5 241 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 CMYA5Q8N3K9 4069 aa14.94□□□□□ -0.02
VPS28-208ENST00000527797 TRGV4A0A0C4DH28 118 aa14.93□□□□□ -0.02
VPS28-208ENST00000527797 SPART-AS1P0CW21 52 aa14.93□□□□□ -0.02
VPS28-208ENST00000527797 DNAJC30Q96LL9 226 aa14.93□□□□□ -0.02
VPS28-208ENST00000527797 TCAPO15273 167 aa14.92□□□□□ -0.02
VPS28-208ENST00000527797 K7EMI3 77 aa14.92□□□□□ -0.02
VPS28-208ENST00000527797 K7EQD1 137 aa14.92□□□□□ -0.02
VPS28-208ENST00000527797 LAGE3Q14657 143 aa14.92□□□□□ -0.02
VPS28-208ENST00000527797 NEXN-AS1Q8NBZ9 246 aa14.92□□□□□ -0.02
VPS28-208ENST00000527797 TRBV27A0A0K0K1C4 114 aa14.91□□□□□ -0.02
VPS28-208ENST00000527797 DAD1P61803 113 aa14.91□□□□□ -0.02
VPS28-208ENST00000527797 NEGR1Q7Z3B1 354 aa14.91□□□□□ -0.02
VPS28-208ENST00000527797 TRBV10-1A0A0K0K1A3 114 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 TEX48A0A1B0GUV7 120 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 FHL2Q14192 279 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 SLC25A29Q8N8R3 303 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 KIR2DL4Q99706 377 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 SPATA25Q9BR10 227 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 CELA1Q9UNI1 258 aa14.9□□□□□ -0.02
VPS28-208ENST00000527797 TRBV6-4A0A1B0GX49 114 aa14.89□□□□□ -0.03
VPS28-208ENST00000527797 HBDP02042 147 aa14.89□□□□□ -0.03
VPS28-208ENST00000527797 FCER1GP30273 86 aa14.89□□□□□ -0.03
VPS28-208ENST00000527797 ORMDL2Q53FV1 153 aa14.89□□□□□ -0.03
VPS28-208ENST00000527797 MRAPQ8TCY5 172 aa14.89□□□□□ -0.03
VPS28-208ENST00000527797 NACAE9PAV3 2078 aa14.89□□□□□ -0.03
VPS28-208ENST00000527797 Q9UF83 564 aa14.88□□□□□ -0.03
VPS28-208ENST00000527797 A0A096LNJ9 63 aa14.88□□□□□ -0.03
VPS28-208ENST00000527797 I3L3M4 83 aa14.88□□□□□ -0.03
VPS28-208ENST00000527797 LEPROTL1O95214 131 aa14.88□□□□□ -0.03
VPS28-208ENST00000527797 C11orf68Q9H3H3 251 aaKnown RBP14.88□□□□□ -0.03
VPS28-208ENST00000527797 RPL36AP83881 106 aaKnown RBP14.87□□□□□ -0.03
VPS28-208ENST00000527797 RPL36ALQ969Q0 106 aaKnown RBP14.87□□□□□ -0.03
VPS28-208ENST00000527797 TM2D3Q9BRN9 247 aa14.87□□□□□ -0.03
VPS28-208ENST00000527797 MGAM2Q2M2H8 2515 aa14.86□□□□□ -0.03
VPS28-208ENST00000527797 NUDT3O95989 172 aa14.86□□□□□ -0.03
VPS28-208ENST00000527797 ZNRF2Q8NHG8 242 aa14.86□□□□□ -0.03
VPS28-208ENST00000527797 PRADC1Q9BSG0 188 aa14.86□□□□□ -0.03
VPS28-208ENST00000527797 TRBV7-3A0A075B6L6 115 aa14.85□□□□□ -0.03
VPS28-208ENST00000527797 RHOHQ15669 191 aa14.85□□□□□ -0.03
VPS28-208ENST00000527797 HSPB8Q9UJY1 196 aa14.85□□□□□ -0.03
VPS28-208ENST00000527797 HHLA3Q9XRX5 114 aa14.85□□□□□ -0.03
VPS28-208ENST00000527797 NOTCH1P46531 2555 aa14.85□□□□□ -0.03
VPS28-208ENST00000527797 ATP5G1P05496 136 aa14.84□□□□□ -0.03
VPS28-208ENST00000527797 BTF3P20290 206 aaKnown RBP14.84□□□□□ -0.03
VPS28-208ENST00000527797 DEFB104AQ8WTQ1 72 aa14.84□□□□□ -0.03
VPS28-208ENST00000527797 NBEAL2Q6ZNJ1 2754 aa14.83□□□□□ -0.03
VPS28-208ENST00000527797 GAGE12JA6NER3 117 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 G0S2P27469 103 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 KRTDAPP60985 99 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 GAGE1Q13065 139 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 GAGE4Q13068 117 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 GAGE5Q13069 117 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 GAGE13Q4V321 117 aa14.83□□□□□ -0.04
VPS28-208ENST00000527797 DNAH3Q8TD57 4116 aa14.82□□□□□ -0.04
VPS28-208ENST00000527797 TSHBP01222 138 aa14.82□□□□□ -0.04
VPS28-208ENST00000527797 LINC00173Q6ZV60 143 aa14.82□□□□□ -0.04
VPS28-208ENST00000527797 PRO0255Q9UI72 69 aa14.82□□□□□ -0.04
VPS28-208ENST00000527797 A0A0J9YWU9 116 aa14.81□□□□□ -0.04
VPS28-208ENST00000527797 C3orf79P0CE67 100 aa14.81□□□□□ -0.04
VPS28-208ENST00000527797 PHLDA1Q8WV24 401 aaPredicted RBP14.81□□□□□ -0.04
VPS28-208ENST00000527797 ZMAT4Q9H898 229 aa14.81□□□□□ -0.04
VPS28-208ENST00000527797 CRYBA4P53673 196 aa14.81□□□□□ -0.04
VPS28-208ENST00000527797 UBE2D3P61077 147 aa14.81□□□□□ -0.04
VPS28-208ENST00000527797 UBE2D2P62837 147 aa14.81□□□□□ -0.04
VPS28-208ENST00000527797 LOC100131303A0A0U1RQF7 123 aa14.8□□□□□ -0.04
VPS28-208ENST00000527797 JOSD1Q15040 202 aaPredicted RBP14.8□□□□□ -0.04
VPS28-208ENST00000527797 C12orf74Q32Q52 190 aa14.8□□□□□ -0.04
VPS28-208ENST00000527797 PYY3Q5JQD4 70 aa14.8□□□□□ -0.04
VPS28-208ENST00000527797 DAZ4Q86SG3 579 aaKnown RBP14.8□□□□□ -0.04
VPS28-208ENST00000527797 DAZ3Q9NR90 486 aaKnown RBP14.8□□□□□ -0.04
VPS28-208ENST00000527797 IGHV3-38A0A0C4DH36 116 aa14.79□□□□□ -0.04
VPS28-208ENST00000527797 COTL1Q14019 142 aa14.79□□□□□ -0.04
VPS28-208ENST00000527797 C2orf66Q6UXQ4 117 aa14.79□□□□□ -0.04
VPS28-208ENST00000527797 TOMM6Q96B49 74 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms