RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TOR2AQ5JU69 321 aa13.96□□□□□ -0.17
VPS28-203ENST00000524521 EIF5A2Q9GZV4 153 aaKnown RBP13.96□□□□□ -0.17
VPS28-203ENST00000524521 RPP21Q9H633 154 aaKnown RBP13.96□□□□□ -0.17
VPS28-203ENST00000524521 A0A087WX48 190 aa13.95□□□□□ -0.18
VPS28-203ENST00000524521 TRBV6-8A0A0A6YYG3 113 aa13.95□□□□□ -0.18
VPS28-203ENST00000524521 NTF3P20783 257 aa13.95□□□□□ -0.18
VPS28-203ENST00000524521 KCNIP4Q6PIL6 250 aa13.95□□□□□ -0.18
VPS28-203ENST00000524521 TMEM262E9PQX1 116 aa13.94□□□□□ -0.18
VPS28-203ENST00000524521 TRGC1P0CF51 173 aa13.94□□□□□ -0.18
VPS28-203ENST00000524521 KLK12Q9UKR0 248 aa13.94□□□□□ -0.18
VPS28-203ENST00000524521 KRTAP17-1Q9BYP8 105 aa13.93□□□□□ -0.18
VPS28-203ENST00000524521 H7C1H1 209 aa13.92□□□□□ -0.18
VPS28-203ENST00000524521 M0QY20 66 aa13.92□□□□□ -0.18
VPS28-203ENST00000524521 WDR73Q6P4I2 378 aa13.92□□□□□ -0.18
VPS28-203ENST00000524521 MAPKAPK5-AS1Q8N8E1 139 aa13.92□□□□□ -0.18
VPS28-203ENST00000524521 FAM210AQ96ND0 272 aa13.92□□□□□ -0.18
VPS28-203ENST00000524521 CHCHD7Q9BUK0 85 aa13.92□□□□□ -0.18
VPS28-203ENST00000524521 GATCO43716 136 aaKnown RBP13.91□□□□□ -0.18
VPS28-203ENST00000524521 CTRLP40313 264 aa13.91□□□□□ -0.18
VPS28-203ENST00000524521 ELOBQ15370 118 aa13.91□□□□□ -0.18
VPS28-203ENST00000524521 TWIST1Q15672 202 aa13.91□□□□□ -0.18
VPS28-203ENST00000524521 SUMO4Q6EEV6 95 aa13.91□□□□□ -0.18
VPS28-203ENST00000524521 DPH3P1Q9H4G8 78 aa13.91□□□□□ -0.18
VPS28-203ENST00000524521 LRP1BQ9NZR2 4599 aa13.91□□□□□ -0.18
VPS28-203ENST00000524521 TMEM97Q5BJF2 176 aa13.9□□□□□ -0.18
VPS28-203ENST00000524521 Q8N814 137 aa13.9□□□□□ -0.18
VPS28-203ENST00000524521 UBE2WQ96B02 151 aa13.9□□□□□ -0.18
VPS28-203ENST00000524521 DNAJC30Q96LL9 226 aa13.9□□□□□ -0.18
VPS28-203ENST00000524521 CHCHD5Q9BSY4 110 aa13.9□□□□□ -0.18
VPS28-203ENST00000524521 GCSHP23434 173 aa13.89□□□□□ -0.19
VPS28-203ENST00000524521 KRTAP10-1P60331 282 aa13.89□□□□□ -0.19
VPS28-203ENST00000524521 NTM-AS1Q6ZSK4 140 aa13.89□□□□□ -0.19
VPS28-203ENST00000524521 RMI2Q96E14 147 aa13.89□□□□□ -0.19
VPS28-203ENST00000524521 SMIM7Q9BQ49 75 aa13.89□□□□□ -0.19
VPS28-203ENST00000524521 COX11Q9Y6N1 276 aa13.89□□□□□ -0.19
VPS28-203ENST00000524521 IGLV5-52A0A0A0MRZ9 124 aa13.88□□□□□ -0.19
VPS28-203ENST00000524521 RASL11AQ6T310 242 aa13.88□□□□□ -0.19
VPS28-203ENST00000524521 FAM231DQ6ZW35 169 aa13.88□□□□□ -0.19
VPS28-203ENST00000524521 GTSF1Q8WW33 167 aa13.88□□□□□ -0.19
VPS28-203ENST00000524521 KRTAP4-5Q9BYR2 181 aa13.88□□□□□ -0.19
VPS28-203ENST00000524521 RYR1P21817 5038 aa13.88□□□□□ -0.19
VPS28-203ENST00000524521 IGKV2D-24A0A075B6R9 120 aa13.87□□□□□ -0.19
VPS28-203ENST00000524521 A8MWL6 223 aa13.87□□□□□ -0.19
VPS28-203ENST00000524521 LECT2O14960 151 aa13.87□□□□□ -0.19
VPS28-203ENST00000524521 NDUFS6O75380 124 aaKnown RBP13.87□□□□□ -0.19
VPS28-203ENST00000524521 SRP19P09132 144 aaKnown RBP13.87□□□□□ -0.19
VPS28-203ENST00000524521 NTN5Q8WTR8 489 aaPredicted RBP13.87□□□□□ -0.19
VPS28-203ENST00000524521 CNFNQ9BYD5 112 aa13.87□□□□□ -0.19
VPS28-203ENST00000524521 ZNF727A8MUV8 499 aa13.86□□□□□ -0.19
VPS28-203ENST00000524521 WFDC2Q14508 124 aa13.86□□□□□ -0.19
VPS28-203ENST00000524521 MPV17L2Q567V2 206 aa13.86□□□□□ -0.19
VPS28-203ENST00000524521 C15orf54Q8N8G6 183 aa13.86□□□□□ -0.19
VPS28-203ENST00000524521 BAALCQ8WXS3 180 aa13.86□□□□□ -0.19
VPS28-203ENST00000524521 NIT2Q9NQR4 276 aa13.86□□□□□ -0.19
VPS28-203ENST00000524521 TRBV25-1A0A075B6N4 114 aa13.85□□□□□ -0.19
VPS28-203ENST00000524521 PKIAP61925 76 aa13.85□□□□□ -0.19
VPS28-203ENST00000524521 PGLYRP4Q96LB8 373 aa13.85□□□□□ -0.19
VPS28-203ENST00000524521 ANGP03950 147 aaKnown RBP13.84□□□□□ -0.19
VPS28-203ENST00000524521 Q0VG73 95 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 GAGE6Q13070 117 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 ATRAIDQ6UW56 229 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 SMIM15Q7Z3B0 74 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 LINC01551Q86U37 167 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 Q8N1X5 172 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 Q8N976 141 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 DNAH5Q8TE73 4624 aa13.84□□□□□ -0.19
VPS28-203ENST00000524521 IGHV1-24A0A0C4DH33 117 aa13.83□□□□□ -0.2
VPS28-203ENST00000524521 CRPP02741 224 aa13.82□□□□□ -0.2
VPS28-203ENST00000524521 FOXA3P55318 350 aaPredicted RBP13.82□□□□□ -0.2
VPS28-203ENST00000524521 XGP55808 180 aa13.82□□□□□ -0.2
VPS28-203ENST00000524521 IQCJQ1A5X6 159 aa13.82□□□□□ -0.2
VPS28-203ENST00000524521 CT83Q5H943 113 aa13.82□□□□□ -0.2
VPS28-203ENST00000524521 TEX261Q6UWH6 196 aa13.82□□□□□ -0.2
VPS28-203ENST00000524521 ENHOQ6UWT2 76 aa13.82□□□□□ -0.2
VPS28-203ENST00000524521 TRAV26-2A0A0B4J265 109 aa13.81□□□□□ -0.2
VPS28-203ENST00000524521 GATD1Q8NB37 220 aa13.81□□□□□ -0.2
VPS28-203ENST00000524521 DEFB104AQ8WTQ1 72 aa13.81□□□□□ -0.2
VPS28-203ENST00000524521 HSPG2P98160 4391 aa13.81□□□□□ -0.2
VPS28-203ENST00000524521 RBX1P62877 108 aa13.8□□□□□ -0.2
VPS28-203ENST00000524521 BORCS7Q96B45 105 aa13.8□□□□□ -0.2
VPS28-203ENST00000524521 C1orf43Q9BWL3 253 aa13.8□□□□□ -0.2
VPS28-203ENST00000524521 OSTCQ9NRP0 149 aa13.8□□□□□ -0.2
VPS28-203ENST00000524521 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.79□□□□□ -0.2
VPS28-203ENST00000524521 TMEM241Q24JQ0 296 aa13.79□□□□□ -0.2
VPS28-203ENST00000524521 TSKUQ8WUA8 353 aa13.79□□□□□ -0.2
VPS28-203ENST00000524521 FAM74A3Q4VXF1 159 aa13.78□□□□□ -0.2
VPS28-203ENST00000524521 FRZBQ92765 325 aa13.78□□□□□ -0.2
VPS28-203ENST00000524521 TMEM243Q9BU79 118 aa13.78□□□□□ -0.2
VPS28-203ENST00000524521 C9JQL5 133 aa13.77□□□□□ -0.21
VPS28-203ENST00000524521 COTL1Q14019 142 aa13.77□□□□□ -0.21
VPS28-203ENST00000524521 PEA15Q15121 130 aa13.77□□□□□ -0.21
VPS28-203ENST00000524521 LINC00269Q8N2A0 174 aa13.77□□□□□ -0.21
VPS28-203ENST00000524521 APOBP04114 4563 aaKnown RBP13.77□□□□□ -0.21
VPS28-203ENST00000524521 HIGD1CA8MV81 97 aa13.76□□□□□ -0.21
VPS28-203ENST00000524521 SRSF3P84103 164 aaKnown RBP13.76□□□□□ -0.21
VPS28-203ENST00000524521 MIAQ16674 131 aa13.76□□□□□ -0.21
VPS28-203ENST00000524521 CLPSL2Q6UWE3 100 aa13.76□□□□□ -0.21
VPS28-203ENST00000524521 RPL39LQ96EH5 51 aaKnown RBP13.76□□□□□ -0.21
VPS28-203ENST00000524521 GFRA4Q9GZZ7 299 aa13.76□□□□□ -0.21
VPS28-203ENST00000524521 A0A1B0GUT8 65 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms