RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ACTR3CQ9C0K3 210 aaPredicted RBP12.73□□□□□ -0.37
SQSTM1-215ENST00000514093 TRBV6-1A0A0K0K1D8 114 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 F5H697 171 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 SSNA1O43805 119 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 DEFA3P59666 94 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 COX6A2Q02221 97 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 ZNF674Q2M3X9 581 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 MAJINQ3KP22 176 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 OR10AG1Q8NH19 301 aa12.72□□□□□ -0.37
SQSTM1-215ENST00000514093 TRBV25-1A0A075B6N4 114 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 IGKV2-24A0A0C4DH68 120 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 MUC21A0A140T8X8 626 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 MBP02144 154 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 TMEM97Q5BJF2 176 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 COX8CQ7Z4L0 72 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 PSMG3Q9BT73 122 aaPredicted RBP12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 VAX2Q9UIW0 290 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 ZFP30Q9Y2G7 519 aa12.71□□□□□ -0.37
SQSTM1-215ENST00000514093 SSTP61278 116 aa12.7□□□□□ -0.38
SQSTM1-215ENST00000514093 C20orf203Q8NBC4 194 aa12.7□□□□□ -0.38
SQSTM1-215ENST00000514093 PRSS3P2Q8NHM4 247 aa12.7□□□□□ -0.38
SQSTM1-215ENST00000514093 GFRA4Q9GZZ7 299 aa12.7□□□□□ -0.38
SQSTM1-215ENST00000514093 TRAV8-4A0A0B4J246 113 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 P01737 135 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 SERF2P84101 59 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 ZNF726P1Q15940 193 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 REG3GQ6UW15 175 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 STPG4Q8N801 248 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 HIST1H2BAQ96A08 127 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 ZNF471Q9BX82 626 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 TNFSF18Q9UNG2 199 aa12.68□□□□□ -0.38
SQSTM1-215ENST00000514093 IGLV4-60A0A075B6I1 120 aa12.67□□□□□ -0.38
SQSTM1-215ENST00000514093 FAM74A7A6NL05 159 aa12.67□□□□□ -0.38
SQSTM1-215ENST00000514093 UBE2G1P62253 170 aa12.67□□□□□ -0.38
SQSTM1-215ENST00000514093 IQCJQ1A5X6 159 aa12.67□□□□□ -0.38
SQSTM1-215ENST00000514093 SPINK6Q6UWN8 80 aa12.67□□□□□ -0.38
SQSTM1-215ENST00000514093 IGHV1-24A0A0C4DH33 117 aa12.66□□□□□ -0.38
SQSTM1-215ENST00000514093 A6NHS1 94 aa12.66□□□□□ -0.38
SQSTM1-215ENST00000514093 FMC1Q96HJ9 113 aa12.66□□□□□ -0.38
SQSTM1-215ENST00000514093 NDUFS6O75380 124 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-215ENST00000514093 C15orf56Q8N910 161 aa12.65□□□□□ -0.38
SQSTM1-215ENST00000514093 RPS10P46783 165 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-215ENST00000514093 HIGD2BQ4VC39 106 aa12.64□□□□□ -0.39
SQSTM1-215ENST00000514093 LTAP01374 205 aa12.63□□□□□ -0.39
SQSTM1-215ENST00000514093 IFITM3Q01628 133 aa12.63□□□□□ -0.39
SQSTM1-215ENST00000514093 SPANXN1Q5VSR9 72 aa12.63□□□□□ -0.39
SQSTM1-215ENST00000514093 INO80EQ8NBZ0 244 aaPredicted RBP12.63□□□□□ -0.39
SQSTM1-215ENST00000514093 MARVELD1Q9BSK0 173 aa12.63□□□□□ -0.39
SQSTM1-215ENST00000514093 GAGE12HA6NDE8 117 aa12.62□□□□□ -0.39
SQSTM1-215ENST00000514093 GZMBP10144 247 aa12.62□□□□□ -0.39
SQSTM1-215ENST00000514093 SRSF9Q13242 221 aaKnown RBP eCLIP12.62□□□□□ -0.39
SQSTM1-215ENST00000514093 NKX6-2Q9C056 277 aaPredicted RBP12.62□□□□□ -0.39
SQSTM1-215ENST00000514093 CTXND1A0A1B0GTU2 59 aa12.61□□□□□ -0.39
SQSTM1-215ENST00000514093 AQP10Q96PS8 301 aa12.61□□□□□ -0.39
SQSTM1-215ENST00000514093 A0A096LNI7 61 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 A0A1B0GUV1 79 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 SNAI2O43623 268 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 UPK1BO75841 260 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 SMIM17P0DL12 118 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 TMEM243Q9BU79 118 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 SSBP4Q9BWG4 385 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 KRTAP9-2Q9BYQ4 174 aa12.6□□□□□ -0.39
SQSTM1-215ENST00000514093 IGKV3OR2-268A0A0C4DH90 116 aa12.59□□□□□ -0.39
SQSTM1-215ENST00000514093 SULT1A2P50226 295 aa12.59□□□□□ -0.39
SQSTM1-215ENST00000514093 CFAP161Q6P656 301 aa12.59□□□□□ -0.39
SQSTM1-215ENST00000514093 MUC2Q02817 5179 aa12.58□□□□□ -0.39
SQSTM1-215ENST00000514093 M0QY20 66 aa12.58□□□□□ -0.4
SQSTM1-215ENST00000514093 MGPP08493 103 aa12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 OR5AL1P0C617 328 aa12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 AKR1C3P42330 323 aa12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 NKX2-5P52952 324 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 CST9LP1Q5W188 147 aa12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 RPL7L1Q6DKI1 246 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 S100ZQ8WXG8 99 aa12.57□□□□□ -0.4
SQSTM1-215ENST00000514093 CXCL1P09341 107 aa12.56□□□□□ -0.4
SQSTM1-215ENST00000514093 AP1S3Q96PC3 154 aa12.56□□□□□ -0.4
SQSTM1-215ENST00000514093 SUMO4Q6EEV6 95 aa12.55□□□□□ -0.4
SQSTM1-215ENST00000514093 Q6ZRP5 223 aa12.55□□□□□ -0.4
SQSTM1-215ENST00000514093 H7C1H1 209 aa12.54□□□□□ -0.4
SQSTM1-215ENST00000514093 STOML3Q8TAV4 291 aa12.54□□□□□ -0.4
SQSTM1-215ENST00000514093 UBE2L6O14933 153 aa12.53□□□□□ -0.4
SQSTM1-215ENST00000514093 Q5BKY6 102 aa12.53□□□□□ -0.4
SQSTM1-215ENST00000514093 MAP1LC3B2A6NCE7 125 aa12.52□□□□□ -0.41
SQSTM1-215ENST00000514093 MAP1LC3BQ9GZQ8 125 aa12.52□□□□□ -0.41
SQSTM1-215ENST00000514093 GVQW2A0A096LPI5 108 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-215ENST00000514093 AKR1C8PQ5T2L2 129 aa12.51□□□□□ -0.41
SQSTM1-215ENST00000514093 CHCHD10Q8WYQ3 142 aaPredicted RBP12.51□□□□□ -0.41
SQSTM1-215ENST00000514093 NDUFA13Q9P0J0 144 aa12.51□□□□□ -0.41
SQSTM1-215ENST00000514093 AMTP48728 403 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 FHITP49789 147 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 LINC00299Q6ZSB3 139 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 BAGE2Q86Y30 109 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 LINC00526Q96FQ7 95 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 TCEAL7Q9BRU2 100 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 MLST8Q9BVC4 326 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 TPPP3Q9BW30 176 aa12.5□□□□□ -0.41
SQSTM1-215ENST00000514093 BORCS7-ASMTA0A0B4J1R7 106 aa12.49□□□□□ -0.41
SQSTM1-215ENST00000514093 PAGE4O60829 102 aa12.49□□□□□ -0.41
SQSTM1-215ENST00000514093 LINC00474Q9P2X8 69 aa12.49□□□□□ -0.41
SQSTM1-215ENST00000514093 FAM231BA6NCW3 169 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms