RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SPAG8Q99932 426 aaPredicted RBP8.85□□□□□ -0.99
NUP54-202ENST00000502850 LINC00467Q9BRT7 94 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 ZANQ9Y493 2812 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 PRSS29PA6NIE9 313 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 A8MWV9 139 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 E9PLD3 99 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 M0QY20 66 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 CRYGDP07320 174 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 SMIM13P0DJ93 91 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 PMVKQ15126 192 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 DEFB136Q30KP8 78 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 TM2D2Q9BX73 214 aa8.84□□□□□ -0.99
NUP54-202ENST00000502850 GCSHP23434 173 aa8.83□□□□□ -1
NUP54-202ENST00000502850 KRTAP1-1Q07627 177 aa8.83□□□□□ -1
NUP54-202ENST00000502850 PRIMA1Q86XR5 153 aa8.83□□□□□ -1
NUP54-202ENST00000502850 TMEM61Q8N0U2 210 aa8.83□□□□□ -1
NUP54-202ENST00000502850 JPT2Q9H910 190 aa8.83□□□□□ -1
NUP54-202ENST00000502850 TRAV8-6A0A0B4J262 113 aa8.83□□□□□ -1
NUP54-202ENST00000502850 MYMXA0A1B0GTQ4 84 aa8.83□□□□□ -1
NUP54-202ENST00000502850 DNAJC9-AS1A6NH13 148 aa8.83□□□□□ -1
NUP54-202ENST00000502850 IGIPA6NJ69 53 aa8.83□□□□□ -1
NUP54-202ENST00000502850 KNCNA6PVL3 124 aa8.83□□□□□ -1
NUP54-202ENST00000502850 I3L3M4 83 aa8.83□□□□□ -1
NUP54-202ENST00000502850 K7EP13 123 aa8.83□□□□□ -1
NUP54-202ENST00000502850 INSP01308 110 aa8.83□□□□□ -1
NUP54-202ENST00000502850 AMMECR1LQ6DCA0 310 aa8.83□□□□□ -1
NUP54-202ENST00000502850 Q6ZSV7 163 aa8.83□□□□□ -1
NUP54-202ENST00000502850 CEND1Q8N111 149 aa8.83□□□□□ -1
NUP54-202ENST00000502850 DUX3Q96PT4 197 aa8.83□□□□□ -1
NUP54-202ENST00000502850 MAP6D1Q9H9H5 199 aa8.83□□□□□ -1
NUP54-202ENST00000502850 JMJD1CQ15652 2540 aa8.82□□□□□ -1
NUP54-202ENST00000502850 M0R2P5 195 aa8.82□□□□□ -1
NUP54-202ENST00000502850 RHODO00212 210 aa8.82□□□□□ -1
NUP54-202ENST00000502850 CRLF1O75462 422 aa8.82□□□□□ -1
NUP54-202ENST00000502850 DEFB114Q30KQ6 69 aa8.82□□□□□ -1
NUP54-202ENST00000502850 C18orf65Q6ZTR6 163 aa8.82□□□□□ -1
NUP54-202ENST00000502850 DLX4Q92988 240 aaPredicted RBP8.82□□□□□ -1
NUP54-202ENST00000502850 GAGE10A6NGK3 116 aa8.81□□□□□ -1
NUP54-202ENST00000502850 NEGR1Q7Z3B1 354 aa8.81□□□□□ -1
NUP54-202ENST00000502850 SPXQ9BT56 116 aa8.81□□□□□ -1
NUP54-202ENST00000502850 SONP18583 2426 aaKnown RBP8.81□□□□□ -1
NUP54-202ENST00000502850 CMC4P56277 68 aaPredicted RBP8.8□□□□□ -1
NUP54-202ENST00000502850 OR5A1Q8NGJ0 315 aa8.8□□□□□ -1
NUP54-202ENST00000502850 PRADC1Q9BSG0 188 aa8.8□□□□□ -1
NUP54-202ENST00000502850 CST9LQ9H4G1 147 aa8.8□□□□□ -1
NUP54-202ENST00000502850 YAE1D1Q9NRH1 226 aa8.8□□□□□ -1
NUP54-202ENST00000502850 C11orf86A6NJI1 115 aa8.8□□□□□ -1
NUP54-202ENST00000502850 H3BUT2 72 aa8.8□□□□□ -1
NUP54-202ENST00000502850 FABP2P12104 132 aa8.8□□□□□ -1
NUP54-202ENST00000502850 FHL3Q13643 280 aa8.8□□□□□ -1
NUP54-202ENST00000502850 HIST1H4GQ99525 98 aa8.8□□□□□ -1
NUP54-202ENST00000502850 TMEM238LA0A1B0GVL6 79 aa8.79□□□□□ -1
NUP54-202ENST00000502850 A0A1W2PPM0 123 aa8.79□□□□□ -1
NUP54-202ENST00000502850 A6NJY4 79 aa8.79□□□□□ -1
NUP54-202ENST00000502850 K7EP34 96 aa8.79□□□□□ -1
NUP54-202ENST00000502850 RBMY1A1P0DJD3 496 aaKnown RBP8.79□□□□□ -1
NUP54-202ENST00000502850 RBMY1CP0DJD4 496 aa8.79□□□□□ -1
NUP54-202ENST00000502850 FXYD2P54710 66 aa8.79□□□□□ -1
NUP54-202ENST00000502850 RBMY1FQ15415 496 aaKnown RBP8.79□□□□□ -1
NUP54-202ENST00000502850 MORN3Q6PF18 240 aaPredicted RBP8.79□□□□□ -1
NUP54-202ENST00000502850 MAPKAPK5-AS1Q8N8E1 139 aa8.79□□□□□ -1
NUP54-202ENST00000502850 TTTY13Q9BZ97 58 aa8.79□□□□□ -1
NUP54-202ENST00000502850 IGLV4-69A0A075B6H9 119 aa8.78□□□□□ -1
NUP54-202ENST00000502850 RBMY1BA6NDE4 496 aaKnown RBP8.78□□□□□ -1
NUP54-202ENST00000502850 RBMY1EA6NEQ0 496 aaKnown RBP8.78□□□□□ -1
NUP54-202ENST00000502850 TSHBP01222 138 aa8.78□□□□□ -1
NUP54-202ENST00000502850 RBMY1DP0C7P1 496 aaKnown RBP8.78□□□□□ -1
NUP54-202ENST00000502850 CRYBA4P53673 196 aa8.78□□□□□ -1
NUP54-202ENST00000502850 CD300EQ496F6 205 aaPredicted RBP8.78□□□□□ -1
NUP54-202ENST00000502850 C20orf203Q8NBC4 194 aa8.78□□□□□ -1
NUP54-202ENST00000502850 DNAJC30Q96LL9 226 aa8.78□□□□□ -1
NUP54-202ENST00000502850 MDFIQ99750 246 aa8.78□□□□□ -1
NUP54-202ENST00000502850 TSSC4Q9Y5U2 329 aaPredicted RBP8.78□□□□□ -1
NUP54-202ENST00000502850 ZNF815PA8K554 130 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 RNASE1P07998 156 aaKnown RBP8.77□□□□□ -1.01
NUP54-202ENST00000502850 RPL39P62891 51 aaKnown RBP8.77□□□□□ -1.01
NUP54-202ENST00000502850 NFE4Q86UQ8 179 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 RAB37Q96AX2 223 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 LINC01587Q99440 93 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 C16orf95Q9H693 158 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 CBY1Q9Y3M2 126 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 TNFRSF18Q9Y5U5 241 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 AGRNO00468 2067 aa8.77□□□□□ -1.01
NUP54-202ENST00000502850 TRBV7-3A0A075B6L6 115 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 CCL24O00175 119 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 SAMD5Q5TGI4 173 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 UFSP1Q6NVU6 142 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 SCGB1D4Q6XE38 83 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 STHQ8IWL8 128 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 NHP2Q9NX24 153 aaKnown RBP8.76□□□□□ -1.01
NUP54-202ENST00000502850 PYGO1Q9Y3Y4 419 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 HTN1P15515 57 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 BEAN1Q3B7T3 259 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 SPCS1Q9Y6A9 102 aa8.76□□□□□ -1.01
NUP54-202ENST00000502850 MXRA5Q9NR99 2828 aa8.75□□□□□ -1.01
NUP54-202ENST00000502850 GAGE12BA1L429 117 aa8.75□□□□□ -1.01
NUP54-202ENST00000502850 A0A1B0GWB2 263 aa8.74□□□□□ -1.01
NUP54-202ENST00000502850 TMEM170BQ5T4T1 132 aa8.74□□□□□ -1.01
NUP54-202ENST00000502850 C11orf72Q8NBR9 251 aa8.74□□□□□ -1.01
NUP54-202ENST00000502850 ZNF418Q8TF45 676 aaPredicted RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 145.2 ms