RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 POM121L12Q8N7R1 296 aa8.73□□□□□ -1.01
HDAC4-210ENST00000493582 TMEM101Q96IK0 257 aa8.73□□□□□ -1.01
HDAC4-210ENST00000493582 LITAFQ99732 161 aa8.73□□□□□ -1.01
HDAC4-210ENST00000493582 COX6CP09669 75 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 IGHV3-30-3P0DP02 117 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 ATP5J2P56134 94 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 C9orf153Q5TBE3 101 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 KLK5Q9Y337 293 aaPredicted RBP8.72□□□□□ -1.01
HDAC4-210ENST00000493582 BSNQ9UPA5 3926 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 TRBV27A0A0K0K1C4 114 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 C9orf139Q6ZV77 190 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 U3KQE9 123 aa8.72□□□□□ -1.01
HDAC4-210ENST00000493582 ANKRD11Q6UB99 2663 aaPredicted RBP8.72□□□□□ -1.01
HDAC4-210ENST00000493582 FAM240AA0A1B0GVK7 77 aa8.71□□□□□ -1.01
HDAC4-210ENST00000493582 A8MZ25 164 aa8.71□□□□□ -1.01
HDAC4-210ENST00000493582 I3L3M4 83 aa8.71□□□□□ -1.01
HDAC4-210ENST00000493582 NRGNQ92686 78 aa8.71□□□□□ -1.02
HDAC4-210ENST00000493582 CSDC2Q9Y534 153 aaKnown RBP8.71□□□□□ -1.02
HDAC4-210ENST00000493582 LST1O00453 97 aa8.7□□□□□ -1.02
HDAC4-210ENST00000493582 UNQ9165/PRO28630Q6UXU0 137 aa8.7□□□□□ -1.02
HDAC4-210ENST00000493582 DUX5Q96PT3 197 aa8.7□□□□□ -1.02
HDAC4-210ENST00000493582 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.7□□□□□ -1.02
HDAC4-210ENST00000493582 MED14OSP0DP75 135 aa8.7□□□□□ -1.02
HDAC4-210ENST00000493582 PLA2G2CQ5R387 149 aa8.7□□□□□ -1.02
HDAC4-210ENST00000493582 DEFB121Q5J5C9 76 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 SMCR5Q8TEV8 140 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 ANKHD1Q8IWZ3 2542 aaKnown RBP8.69□□□□□ -1.02
HDAC4-210ENST00000493582 OVOL1O14753 267 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 NDUFA7O95182 113 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 DAND5Q8N907 189 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 DNAJC30Q96LL9 226 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 TIMM21Q9BVV7 248 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 A0A0J9YX75 114 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 IGHV1-69P01742 117 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 HERVK_113P63121 156 aa8.69□□□□□ -1.02
HDAC4-210ENST00000493582 RNASE13Q5GAN3 156 aaKnown RBP8.69□□□□□ -1.02
HDAC4-210ENST00000493582 NPFFO15130 113 aa8.68□□□□□ -1.02
HDAC4-210ENST00000493582 NXPH4O95158 308 aa8.68□□□□□ -1.02
HDAC4-210ENST00000493582 C3orf22Q8N5N4 141 aa8.68□□□□□ -1.02
HDAC4-210ENST00000493582 IGLV4-3A0A075B6K6 122 aa8.68□□□□□ -1.02
HDAC4-210ENST00000493582 TRBV12-3P01733 135 aa8.68□□□□□ -1.02
HDAC4-210ENST00000493582 IGFL3Q6UXB1 125 aa8.68□□□□□ -1.02
HDAC4-210ENST00000493582 TRBV7-1A0A0A6YYK4 115 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 TRAV12-3A0A0B4J271 114 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 C20orf203Q8NBC4 194 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 FAM19A4Q96LR4 140 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 M0R1W7 72 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 LINC01560Q8TB33 94 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 NDUFA12Q9UI09 145 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 M0QY20 66 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 SOCS3O14543 225 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 AKAP13Q12802 2813 aa8.67□□□□□ -1.02
HDAC4-210ENST00000493582 AKAP6Q13023 2319 aa8.66□□□□□ -1.02
HDAC4-210ENST00000493582 TMEM61Q8N0U2 210 aa8.66□□□□□ -1.02
HDAC4-210ENST00000493582 TRBV6-5A0A0K0K1A5 114 aa8.66□□□□□ -1.02
HDAC4-210ENST00000493582 NBASA2RRP1 2371 aa8.66□□□□□ -1.02
HDAC4-210ENST00000493582 ZFHX2Q9C0A1 2572 aaPredicted RBP8.66□□□□□ -1.02
HDAC4-210ENST00000493582 TRAV41A0A0B4J266 112 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 MIAQ16674 131 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 NSUN5P1Q3KNT7 163 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 UQCRQO14949 82 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 LY6DQ14210 128 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 MINOS1Q5TGZ0 78 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 FAM19A5Q7Z5A7 132 aaPredicted RBP8.65□□□□□ -1.02
HDAC4-210ENST00000493582 IMUPQ9GZP8 106 aa8.65□□□□□ -1.02
HDAC4-210ENST00000493582 CELSR1Q9NYQ6 3014 aa8.65□□□□□ -1.03
HDAC4-210ENST00000493582 DEFB124Q8NES8 71 aa8.65□□□□□ -1.03
HDAC4-210ENST00000493582 SPTA1P02549 2419 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 APRG1Q8IVJ8 170 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 RHOHQ15669 191 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 DCANP1Q8TF63 244 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 LINC00526Q96FQ7 95 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 SPANXDQ9BXN6 97 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 SPANXCQ9NY87 97 aa8.64□□□□□ -1.03
HDAC4-210ENST00000493582 SORL1Q92673 2214 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 CD28P10747 220 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 ZFP36P26651 326 aaKnown RBP8.63□□□□□ -1.03
HDAC4-210ENST00000493582 IGHV1-58A0A0C4DH39 117 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 C5orf47Q569G3 176 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 FAM104AQ969W3 186 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 IGKV3-20P01619 116 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 LINC00643Q86TS7 51 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 CITED2Q99967 270 aaPredicted RBP8.63□□□□□ -1.03
HDAC4-210ENST00000493582 MINOS1-NBL1R4GNA1 71 aa8.63□□□□□ -1.03
HDAC4-210ENST00000493582 COL6A6A6NMZ7 2263 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 TRAV12-2A0A075B6T6 113 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 A0A0U1RRA0 63 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 SMIM9A6NGZ8 99 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 ACYP1P07311 99 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 TMEM219Q86XT9 240 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 EDA2RQ9HAV5 297 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 KLLNB2CW77 178 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 IGHV3-11P01762 117 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 KLK9Q2XQG4 91 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 KLK9Q9UKQ9 250 aa8.62□□□□□ -1.03
HDAC4-210ENST00000493582 MRPS36P82909 103 aaKnown RBP8.61□□□□□ -1.03
HDAC4-210ENST00000493582 DAZ2Q13117 558 aaKnown RBP8.61□□□□□ -1.03
HDAC4-210ENST00000493582 DAZ4Q86SG3 579 aaKnown RBP8.61□□□□□ -1.03
HDAC4-210ENST00000493582 VSIG2Q96IQ7 327 aa8.61□□□□□ -1.03
HDAC4-210ENST00000493582 DAZ1Q9NQZ3 744 aaKnown RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms