RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.83□□□□□ -1
VARS-227ENST00000489979 SPACA4Q8TDM5 124 aa8.83□□□□□ -1
VARS-227ENST00000489979 LINC01600Q96MT4 127 aa8.83□□□□□ -1
VARS-227ENST00000489979 SLPIP03973 132 aa8.82□□□□□ -1
VARS-227ENST00000489979 INO80EQ8NBZ0 244 aaPredicted RBP8.82□□□□□ -1
VARS-227ENST00000489979 HIST1H2BAQ96A08 127 aa8.82□□□□□ -1
VARS-227ENST00000489979 TNFSF18Q9UNG2 199 aa8.82□□□□□ -1
VARS-227ENST00000489979 ZFP30Q9Y2G7 519 aa8.82□□□□□ -1
VARS-227ENST00000489979 FAM74A7A6NL05 159 aa8.81□□□□□ -1
VARS-227ENST00000489979 TMEM97Q5BJF2 176 aa8.81□□□□□ -1
VARS-227ENST00000489979 C7orf33Q8WU49 177 aa8.81□□□□□ -1
VARS-227ENST00000489979 DERL1Q9BUN8 251 aa8.81□□□□□ -1
VARS-227ENST00000489979 AP5S1Q9NUS5 200 aa8.81□□□□□ -1
VARS-227ENST00000489979 PLAC8Q9NZF1 115 aa8.81□□□□□ -1
VARS-227ENST00000489979 KIF25-AS1Q9Y6Z4 181 aa8.81□□□□□ -1
VARS-227ENST00000489979 TRBV25-1A0A075B6N4 114 aa8.8□□□□□ -1
VARS-227ENST00000489979 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.8□□□□□ -1
VARS-227ENST00000489979 TRBV6-1A0A0K0K1D8 114 aa8.8□□□□□ -1
VARS-227ENST00000489979 REG3AQ06141 175 aa8.8□□□□□ -1
VARS-227ENST00000489979 ZNF726P1Q15940 193 aa8.8□□□□□ -1
VARS-227ENST00000489979 OR10AG1Q8NH19 301 aa8.8□□□□□ -1
VARS-227ENST00000489979 VAX2Q9UIW0 290 aa8.8□□□□□ -1
VARS-227ENST00000489979 FXYD6-FXYD2A0A087WZ82 144 aa8.79□□□□□ -1
VARS-227ENST00000489979 F5H697 171 aa8.79□□□□□ -1
VARS-227ENST00000489979 UBE2G1P62253 170 aa8.79□□□□□ -1
VARS-227ENST00000489979 FMC1Q96HJ9 113 aa8.79□□□□□ -1
VARS-227ENST00000489979 NKX6-2Q9C056 277 aaPredicted RBP8.79□□□□□ -1
VARS-227ENST00000489979 LPAP08519 4548 aa8.79□□□□□ -1
VARS-227ENST00000489979 CTXND1A0A1B0GTU2 59 aa8.78□□□□□ -1
VARS-227ENST00000489979 RAB5CP51148 216 aa8.78□□□□□ -1
VARS-227ENST00000489979 GTSF1Q8WW33 167 aa8.78□□□□□ -1
VARS-227ENST00000489979 AQP10Q96PS8 301 aa8.78□□□□□ -1
VARS-227ENST00000489979 ZNF471Q9BX82 626 aaPredicted RBP8.78□□□□□ -1
VARS-227ENST00000489979 hCG_2014768A0A024R1R8 64 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 BORCS7-ASMTA0A0B4J1R7 106 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 TRAV8-4A0A0B4J246 113 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 MUC21A0A0G2JKD1 596 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 A0A0J9YXV3 536 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 MUC21A0A140T8X8 626 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 GAS8-AS1O95177 125 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 LTAP01374 205 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 P01737 135 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 PRR3P79522 188 aaKnown RBP8.77□□□□□ -1.01
VARS-227ENST00000489979 IQCJQ1A5X6 159 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 WDR73Q6P4I2 378 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 C20orf203Q8NBC4 194 aa8.77□□□□□ -1.01
VARS-227ENST00000489979 IGHV1-24A0A0C4DH33 117 aa8.76□□□□□ -1.01
VARS-227ENST00000489979 A0A1B0GVG6 124 aa8.76□□□□□ -1.01
VARS-227ENST00000489979 KRTAP10-8P60410 259 aa8.76□□□□□ -1.01
VARS-227ENST00000489979 SSTP61278 116 aa8.76□□□□□ -1.01
VARS-227ENST00000489979 COX6A2Q02221 97 aa8.76□□□□□ -1.01
VARS-227ENST00000489979 IGLV4-60A0A075B6I1 120 aa8.75□□□□□ -1.01
VARS-227ENST00000489979 MAJINQ3KP22 176 aa8.75□□□□□ -1.01
VARS-227ENST00000489979 SPANXN1Q5VSR9 72 aa8.75□□□□□ -1.01
VARS-227ENST00000489979 GFRA4Q9GZZ7 299 aa8.75□□□□□ -1.01
VARS-227ENST00000489979 IGKV2-24A0A0C4DH68 120 aa8.74□□□□□ -1.01
VARS-227ENST00000489979 SNAI2O43623 268 aa8.74□□□□□ -1.01
VARS-227ENST00000489979 CXCL1P09341 107 aa8.74□□□□□ -1.01
VARS-227ENST00000489979 GZMBP10144 247 aa8.74□□□□□ -1.01
VARS-227ENST00000489979 AKR1C3P42330 323 aa8.74□□□□□ -1.01
VARS-227ENST00000489979 RPL7L1Q6DKI1 246 aaKnown RBP8.74□□□□□ -1.01
VARS-227ENST00000489979 SSBP4Q9BWG4 385 aaPredicted RBP8.74□□□□□ -1.01
VARS-227ENST00000489979 ARPC5O15511 151 aa8.73□□□□□ -1.01
VARS-227ENST00000489979 NDUFS6O75380 124 aaKnown RBP8.73□□□□□ -1.01
VARS-227ENST00000489979 OR5AL1P0C617 328 aa8.73□□□□□ -1.01
VARS-227ENST00000489979 SMIM17P0DL12 118 aa8.73□□□□□ -1.01
VARS-227ENST00000489979 CST9LP1Q5W188 147 aa8.73□□□□□ -1.01
VARS-227ENST00000489979 PRSS3P2Q8NHM4 247 aa8.73□□□□□ -1.01
VARS-227ENST00000489979 LYPD6BQ8NI32 183 aa8.73□□□□□ -1.01
VARS-227ENST00000489979 A0A1B0GUV1 79 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 RPS10P46783 165 aaKnown RBP8.72□□□□□ -1.01
VARS-227ENST00000489979 Q5BKY6 102 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 REG3GQ6UW15 175 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 Q6ZNX1 250 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 STPG4Q8N801 248 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 C15orf56Q8N910 161 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 TCEAL7Q9BRU2 100 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 TMEM243Q9BU79 118 aa8.72□□□□□ -1.01
VARS-227ENST00000489979 MAP1LC3B2A6NCE7 125 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 FHITP49789 147 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 AKR1C8PQ5T2L2 129 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 SPINK6Q6UWN8 80 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 STOML3Q8TAV4 291 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 AP1S3Q96PC3 154 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 MAP1LC3BQ9GZQ8 125 aa8.71□□□□□ -1.02
VARS-227ENST00000489979 KANTRA0A1W2PQU2 76 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 GAGE12HA6NDE8 117 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 M0QY20 66 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 MGPP08493 103 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 EIF5AP63241 154 aaKnown RBP8.7□□□□□ -1.02
VARS-227ENST00000489979 ZNF345Q14585 488 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 HIGD2BQ4VC39 106 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 CFAP161Q6P656 301 aa8.7□□□□□ -1.02
VARS-227ENST00000489979 HMSDA8MTL9 139 aa8.69□□□□□ -1.02
VARS-227ENST00000489979 SMLR1H3BR10 107 aa8.69□□□□□ -1.02
VARS-227ENST00000489979 PFDN1O60925 122 aa8.69□□□□□ -1.02
VARS-227ENST00000489979 SULT1A2P50226 295 aa8.69□□□□□ -1.02
VARS-227ENST00000489979 NKX2-5P52952 324 aaPredicted RBP8.69□□□□□ -1.02
VARS-227ENST00000489979 SUMO4Q6EEV6 95 aa8.69□□□□□ -1.02
VARS-227ENST00000489979 H7C1H1 209 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 193.1 ms