RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 RHODO00212 210 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 HMGB3O15347 200 aaKnown RBP4.82□□□□□ -1.64
USP54-211ENST00000474929 OR7C2O60412 319 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 NDUFB4O95168 129 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 TYMSP04818 313 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 RANP62826 216 aaKnown RBP4.82□□□□□ -1.64
USP54-211ENST00000474929 MPV17L2Q567V2 206 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 OR11H4Q8NGC9 324 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 SUN5Q8TC36 379 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 KCNIP2Q9NS61 270 aa4.82□□□□□ -1.64
USP54-211ENST00000474929 SSPOA2VEC9 5147 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 A0A1W2PPV4 95 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 G3V3Q6 166 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 CSN1S1P47710 185 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 RAB2AP61019 212 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 EIF5AP63241 154 aaKnown RBP4.81□□□□□ -1.64
USP54-211ENST00000474929 KRTAP26-1Q6PEX3 210 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 UQCC3Q6UW78 93 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 PRSS3P2Q8NHM4 247 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 TMED6Q8WW62 240 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 FXYD5Q96DB9 178 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 AQP10Q96PS8 301 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 PARLQ9H300 379 aa4.81□□□□□ -1.64
USP54-211ENST00000474929 A0A096LNI7 61 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 TRBV6-8A0A0A6YYG3 113 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 TRBV10-1A0A0K0K1A3 114 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 TEX46H3BTG2 121 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 ARPC5O15511 151 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 ATP6V0CP27449 155 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 UBE2L3P68036 154 aaKnown RBP4.8□□□□□ -1.64
USP54-211ENST00000474929 RPL36AP83881 106 aaKnown RBP4.8□□□□□ -1.64
USP54-211ENST00000474929 TMEM97Q5BJF2 176 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 C1orf137Q5JT78 98 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 ZNF506Q5JVG8 444 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 RPL7L1Q6DKI1 246 aaKnown RBP4.8□□□□□ -1.64
USP54-211ENST00000474929 KCNRGQ8N5I3 272 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 RPL36ALQ969Q0 106 aaKnown RBP4.8□□□□□ -1.64
USP54-211ENST00000474929 C9orf85Q96MD7 179 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 TNFSF18Q9UNG2 199 aa4.8□□□□□ -1.64
USP54-211ENST00000474929 USH2AO75445 5202 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 A0A087WWL8 130 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 BORCS7-ASMTA0A0B4J1R7 106 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 RAB19A4D1S5 217 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 GNRH2O43555 120 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 TSPAN13O95857 204 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 SLPIP03973 132 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 TAS2R45P59539 299 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 ZNF674Q2M3X9 581 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 LCE1DQ5T752 114 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 EIF5AL1Q6IS14 154 aaKnown RBP4.79□□□□□ -1.64
USP54-211ENST00000474929 TMUB2Q71RG4 321 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 COMMD7Q86VX2 200 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 STOML3Q8TAV4 291 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 TSKUQ8WUA8 353 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 GPR98Q8WXG9 6306 aa4.79□□□□□ -1.64
USP54-211ENST00000474929 KANTRA0A1W2PQU2 76 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 IGLV7-43P04211 117 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 KRTAP1-4P0C5Y4 121 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 ASB16-AS1Q495Z4 193 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 KHDC3LQ587J8 217 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 LINC00269Q8N2A0 174 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 RAB24Q969Q5 203 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 CHCHD5Q9BSY4 110 aa4.78□□□□□ -1.64
USP54-211ENST00000474929 BCL2L11O43521 198 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 MBP02144 154 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 ARL14EPLP0DKL9 152 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 CDC34P49427 236 aaPredicted RBP4.77□□□□□ -1.65
USP54-211ENST00000474929 SERF2P84101 59 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 REG3AQ06141 175 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 CLPSL2Q6UWE3 100 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 PQLC2Q6ZP29 291 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 CMTM2Q8TAZ6 248 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 SGK494Q96LW2 274 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 PSMG3Q9BT73 122 aaPredicted RBP4.77□□□□□ -1.65
USP54-211ENST00000474929 ACTR3CQ9C0K3 210 aaPredicted RBP4.77□□□□□ -1.65
USP54-211ENST00000474929 CYTL1Q9NRR1 136 aa4.77□□□□□ -1.65
USP54-211ENST00000474929 IGLV7-46A0A075B6I9 117 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 TRBV7-3A0A075B6L6 115 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 STAG3L2P0CL84 134 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 STAG3L3P0CL85 134 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 GCHFRP30047 84 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 SEC61BP60468 96 aaKnown RBP4.76□□□□□ -1.65
USP54-211ENST00000474929 UBE2D3P61077 147 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 UBE2D2P62837 147 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 GNG5P63218 68 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 CTAG1AP78358 180 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 FAM74A1Q5RGS3 127 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 AKR1C8PQ5T2L2 129 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 GOLT1AQ6ZVE7 132 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 OTORQ9NRC9 128 aa4.76□□□□□ -1.65
USP54-211ENST00000474929 PGPEP1LA6NFU8 196 aa4.75□□□□□ -1.65
USP54-211ENST00000474929 CXorf1O96002 111 aa4.75□□□□□ -1.65
USP54-211ENST00000474929 TPT1P13693 172 aaKnown RBP4.75□□□□□ -1.65
USP54-211ENST00000474929 RBX1P62877 108 aa4.75□□□□□ -1.65
USP54-211ENST00000474929 SUMO1P63165 101 aaKnown RBP4.75□□□□□ -1.65
USP54-211ENST00000474929 ZNF726P1Q15940 193 aa4.75□□□□□ -1.65
USP54-211ENST00000474929 C14orf178Q8N769 122 aaPredicted RBP4.75□□□□□ -1.65
USP54-211ENST00000474929 SMDT1Q9H4I9 107 aa4.75□□□□□ -1.65
USP54-211ENST00000474929 SYNE2Q8WXH0 6885 aaKnown RBP4.75□□□□□ -1.65
USP54-211ENST00000474929 FCGBPQ9Y6R7 5405 aaPredicted RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms