RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 TRBV7-7A0A0K0K1E9 115 aa10.21□□□□□ -0.78
USP40-208ENST00000450966 G3V318 75 aa10.21□□□□□ -0.78
USP40-208ENST00000450966 BPY2O14599 106 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 WDR86Q86TI4 376 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 LTBP2Q14767 1821 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 CFHR3Q02985 330 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 PLXNA2O75051 1894 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 CGB3P0DN86 165 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 TIRAPP58753 221 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 C5orf38Q86SI9 138 aa10.2□□□□□ -0.78
USP40-208ENST00000450966 TRBV27A0A0K0K1C4 114 aa10.19□□□□□ -0.78
USP40-208ENST00000450966 WT1P19544 449 aaPredicted RBP10.19□□□□□ -0.78
USP40-208ENST00000450966 RSPO1Q2MKA7 263 aaPredicted RBP10.19□□□□□ -0.78
USP40-208ENST00000450966 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.19□□□□□ -0.78
USP40-208ENST00000450966 IGKV2-29A2NJV5 120 aaPredicted RBP10.19□□□□□ -0.78
USP40-208ENST00000450966 CRYGAP11844 174 aa10.19□□□□□ -0.78
USP40-208ENST00000450966 ADORA2A-AS1P86434 159 aa10.19□□□□□ -0.78
USP40-208ENST00000450966 KLK9Q9UKQ9 250 aa10.19□□□□□ -0.78
USP40-208ENST00000450966 IL17DQ8TAD2 202 aa10.19□□□□□ -0.78
USP40-208ENST00000450966 UBE2D3P61077 147 aa10.18□□□□□ -0.78
USP40-208ENST00000450966 UBE2D2P62837 147 aa10.18□□□□□ -0.78
USP40-208ENST00000450966 ZNRD1Q9P1U0 126 aa10.18□□□□□ -0.78
USP40-208ENST00000450966 GNRH2O43555 120 aa10.18□□□□□ -0.78
USP40-208ENST00000450966 IGHV3-16A0A0C4DH30 117 aa10.18□□□□□ -0.78
USP40-208ENST00000450966 CGB7P0DN87 165 aa10.18□□□□□ -0.78
USP40-208ENST00000450966 KIAA2026Q5HYC2 2103 aa10.17□□□□□ -0.78
USP40-208ENST00000450966 TMEM89A2RUT3 159 aa10.17□□□□□ -0.78
USP40-208ENST00000450966 DIAPH2-AS1Q14236 149 aa10.17□□□□□ -0.78
USP40-208ENST00000450966 SOSTDC1Q6X4U4 206 aa10.17□□□□□ -0.78
USP40-208ENST00000450966 DIDO1Q9BTC0 2240 aaKnown RBP10.17□□□□□ -0.78
USP40-208ENST00000450966 PRR15LQ9BU68 103 aa10.17□□□□□ -0.78
USP40-208ENST00000450966 C4orf26Q17RF5 130 aa10.16□□□□□ -0.78
USP40-208ENST00000450966 XCL1P47992 114 aa10.16□□□□□ -0.78
USP40-208ENST00000450966 TMEM263Q8WUH6 116 aaKnown RBP10.16□□□□□ -0.78
USP40-208ENST00000450966 PYGO1Q9Y3Y4 419 aa10.16□□□□□ -0.78
USP40-208ENST00000450966 TMEM223A0PJW6 202 aa10.16□□□□□ -0.78
USP40-208ENST00000450966 IGHV4-28A0A0C4DH34 117 aa10.15□□□□□ -0.78
USP40-208ENST00000450966 C20orf203Q8NBC4 194 aa10.15□□□□□ -0.78
USP40-208ENST00000450966 IGHV7-4-1A0A0J9YVY3 117 aa10.15□□□□□ -0.79
USP40-208ENST00000450966 HOXB4P17483 251 aaPredicted RBP10.15□□□□□ -0.79
USP40-208ENST00000450966 DEFB112Q30KQ8 113 aa10.15□□□□□ -0.79
USP40-208ENST00000450966 MIR7-3HGQ8N6C7 128 aa10.15□□□□□ -0.79
USP40-208ENST00000450966 HELZP42694 1942 aaKnown RBP10.14□□□□□ -0.79
USP40-208ENST00000450966 SPRY2O43597 315 aa10.14□□□□□ -0.79
USP40-208ENST00000450966 LINC00322Q6ZN03 302 aaPredicted RBP10.14□□□□□ -0.79
USP40-208ENST00000450966 CADP27708 2225 aa10.14□□□□□ -0.79
USP40-208ENST00000450966 ANAPC1Q9H1A4 1944 aa10.14□□□□□ -0.79
USP40-208ENST00000450966 NCR3O14931 201 aa10.14□□□□□ -0.79
USP40-208ENST00000450966 ROS1P08922 2347 aa10.13□□□□□ -0.79
USP40-208ENST00000450966 UBE2D1P51668 147 aa10.13□□□□□ -0.79
USP40-208ENST00000450966 AJUBAQ96IF1 538 aa10.13□□□□□ -0.79
USP40-208ENST00000450966 TPSG1Q9NRR2 321 aa10.13□□□□□ -0.79
USP40-208ENST00000450966 IGKV1OR2-108A0A075B7D4 117 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 MYCNOSP40205 109 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 KIR2DL5BQ8NHK3 375 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 ARFGEF3Q5TH69 2177 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 ZNF295-AS1Q8N0V1 137 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 P0C879 139 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 FAM222AQ5U5X8 452 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 C9orf85Q96MD7 179 aa10.12□□□□□ -0.79
USP40-208ENST00000450966 IGHV4-61A0A0C4DH41 118 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 LHBP01229 141 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 LINC00308Q8TCZ7 52 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 IGHV4-30-2A0A087WSY4 118 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 TRBV7-6A0A0J9YX20 115 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 FGF23Q9GZV9 251 aaPredicted RBP10.11□□□□□ -0.79
USP40-208ENST00000450966 ZNF22P17026 224 aaPredicted RBP10.11□□□□□ -0.79
USP40-208ENST00000450966 DEFB105AQ8NG35 78 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 USF3Q68DE3 2245 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 CCL24O00175 119 aa10.11□□□□□ -0.79
USP40-208ENST00000450966 ANGP03950 147 aaKnown RBP10.11□□□□□ -0.79
USP40-208ENST00000450966 C9orf47Q6ZRZ4 202 aa10.1□□□□□ -0.79
USP40-208ENST00000450966 DIRC1Q969H9 104 aa10.1□□□□□ -0.79
USP40-208ENST00000450966 FER1L5A0AVI2 2057 aa10.1□□□□□ -0.79
USP40-208ENST00000450966 IGLV2-14P01704 120 aa10.1□□□□□ -0.79
USP40-208ENST00000450966 I3L2K1 104 aa10.1□□□□□ -0.79
USP40-208ENST00000450966 IGKV1-17P01599 117 aa10.09□□□□□ -0.79
USP40-208ENST00000450966 PHF3Q92576 2039 aaKnown RBP10.08□□□□□ -0.8
USP40-208ENST00000450966 SERTAD4-AS1Q5TG53 156 aa10.08□□□□□ -0.8
USP40-208ENST00000450966 DOCK7Q96N67 2140 aa10.08□□□□□ -0.8
USP40-208ENST00000450966 A0A0J9YX75 114 aa10.08□□□□□ -0.8
USP40-208ENST00000450966 PKDREJQ9NTG1 2253 aa10.08□□□□□ -0.8
USP40-208ENST00000450966 SPTAN1Q13813 2472 aaKnown RBP10.08□□□□□ -0.8
USP40-208ENST00000450966 IGHV4-59P01825 116 aa10.07□□□□□ -0.8
USP40-208ENST00000450966 GRNP28799 593 aaKnown RBP10.07□□□□□ -0.8
USP40-208ENST00000450966 HHLA3Q9XRX5 114 aa10.07□□□□□ -0.8
USP40-208ENST00000450966 GPR179Q6PRD1 2367 aa10.07□□□□□ -0.8
USP40-208ENST00000450966 NDUFA1O15239 70 aa10.07□□□□□ -0.8
USP40-208ENST00000450966 TNRC6BQ9UPQ9 1833 aaKnown RBP10.07□□□□□ -0.8
USP40-208ENST00000450966 NPBQ8NG41 125 aa10.07□□□□□ -0.8
USP40-208ENST00000450966 ZNF503-AS2A6NEH8 195 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 EBI3Q14213 229 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 IGKV2D-24A0A075B6R9 120 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 A0A096LPF7 62 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 PRYO14603 147 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 SCXQ7RTU7 201 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 Q8NA96 180 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 URB1-AS1Q96HZ7 61 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 SHANK1Q9Y566 2161 aa10.06□□□□□ -0.8
USP40-208ENST00000450966 ESRGQ1W209 222 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms